Rroxscaffold_1G00021540

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013237
Physical Location & Seq
Forward (+)
26449936 .. 26450439
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021540.1

Sequence Viewer

Length: 504 bp
ATGGCGACTAGTAAAACCTACTACGCTAGGCCGAACTACCGGTACCTCCCGACAGATCACCACCACCAGACACTGGGCGCCGACTCGGCATTCGAACTCGACGAGTCCGACATCTACAGCTTCGCCCGGTCCAGCTCGCCGGAGTACCGCAAGCCGGCGATGAGCTCCCGCGTCGTCTCCTCGGCGGCGTCCAAGAAGTCCGCCTCGTCCAAGCGCTCCGACGCCGGCGACCGGAACGGCGGGACCGCGGCGTCGCTGCCGGTGGGCATTCCGGACTGGTCCAAGATCCTGAGGAACGAGTACCGAGAAAACCGGCGGAGCGGCGACGACAACGACGACTTGGACGACGAGTGCTTCGACGGGAGCGTCCCGCCGCACGAGTTTTTGGCGAGGACGAGAATCGCGTCGTTCTCGGTTCACGAAGGCGTGGGGAGGACGCTGAAGGGGAGGGACCTCAGCCGGGTCAGAAATGCAATTTGGGAAAAAACCGGGTTCGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

167

Amino Acids

18.65

Weight (kDa)

6.52

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 20 - 167 1.6e-40 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 250, 365
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 2 cut(s) 42, 77
AccB7I CCANNNNNTGG 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 321
AccII CGCG 3 cut(s) 171, 248, 404
AccIII TCCGGA 1 cut(s) 271
AclWI GGATC 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 4 cut(s) 78, 188, 222, 251
AfaI GTAC 3 cut(s) 44, 146, 302
AfeI AGCGCT 1 cut(s) 215
AfiI CCNNNNNNNGG 4 cut(s) 73, 154, 231, 460
AgeI ACCGGT 1 cut(s) 39
AhlI ACTAGT 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 3 cut(s) 120, 135, 165
AluI AGCT 3 cut(s) 120, 135, 165
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 271
Aor51HI AGCGCT 1 cut(s) 215
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 256
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 338, 370
AsiGI ACCGGT 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 80, 216
AspS9I GGNCC 4 cut(s) 129, 243, 279, 451
AsuC2I CCSGG 3 cut(s) 127, 461, 490
AsuHPI GGTGA 1 cut(s) 50
AsuII TTCGAA 2 cut(s) 93, 495
AvaII GGWCC 4 cut(s) 129, 243, 279, 451
AxyI CCTNAGG 1 cut(s) 290
BanI GGYRCC 2 cut(s) 42, 77
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 243
BceAI ACGGC 1 cut(s) 253
BcnI CCSGG 3 cut(s) 127, 461, 490
BcoDI GTCTC 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 27
BfmI CTRYAG 1 cut(s) 115
BfoI RGCGCY 2 cut(s) 81, 217
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 5 cut(s) 186, 249, 257, 322, 374
BlsI GCNGC 5 cut(s) 187, 250, 258, 323, 375
Bme1390I CCNGG 3 cut(s) 127, 461, 490
Bme18I GGWCC 4 cut(s) 129, 243, 279, 451
BmgT120I GGNCC 4 cut(s) 129, 243, 279, 451
BmiI GGNNCC 4 cut(s) 44, 79, 244, 452
BmrFI CCNGG 3 cut(s) 127, 461, 490
BmrI ACTGGG 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 455
Bpu14I TTCGAA 2 cut(s) 93, 495
BpuMI CCSGG 3 cut(s) 127, 461, 490
BsaHI GRCGYC 4 cut(s) 78, 188, 222, 251
BsaJI CCNNGG 2 cut(s) 180, 246
BsaWI WCCGGW 3 cut(s) 39, 231, 271
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 154, 231, 460
Bse118I RCCGGY 5 cut(s) 39, 154, 224, 259, 312
Bse1I ACTGG 2 cut(s) 78, 281
Bse21I CCTNAGG 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 180, 246
BseLI CCNNNNNNNGG 4 cut(s) 73, 154, 231, 460
BseMII CTCAG 2 cut(s) 281, 469
BseNI ACTGG 2 cut(s) 78, 281
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 243
Bsh1236I CGCG 3 cut(s) 171, 248, 404
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 2 cut(s) 42, 77
BshTI ACCGGT 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 167
BslFI GGGAC 3 cut(s) 256, 353, 464
BslI CCNNNNNNNGG 4 cut(s) 73, 154, 231, 460
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 3 cut(s) 256, 353, 464
BsmI GAATGC 2 cut(s) 89, 267
BsnI GGCC 1 cut(s) 31
Bsp119I TTCGAA 2 cut(s) 93, 495
Bsp1286I GDGCHC 1 cut(s) 167
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 2 cut(s) 55, 285
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 282, 468
BspEI TCCGGA 1 cut(s) 271
BspFNI CGCG 3 cut(s) 171, 248, 404
BspLI GGNNCC 4 cut(s) 44, 79, 244, 452
BspPI GGATC 1 cut(s) 280
BspT104I TTCGAA 2 cut(s) 93, 495
BspT107I GGYRCC 2 cut(s) 42, 77
BsrBI CCGCTC 1 cut(s) 321
BsrFI RCCGGY 5 cut(s) 39, 154, 224, 259, 312
BsrI ACTGG 2 cut(s) 78, 281
BssAI RCCGGY 5 cut(s) 39, 154, 224, 259, 312
BssECI CCNNGG 2 cut(s) 180, 246
BssMI GATC 2 cut(s) 55, 285
BssNI GRCGYC 4 cut(s) 78, 188, 222, 251
BssSI CACGAG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 377
BstACI GRCGYC 4 cut(s) 78, 188, 222, 251
BstBI TTCGAA 2 cut(s) 93, 495
BstC8I GCNNGC 4 cut(s) 137, 152, 156, 226
BstDEI CTNAG 2 cut(s) 290, 455
BstDSI CCRYGG 1 cut(s) 246
BstFNI CGCG 3 cut(s) 171, 248, 404
BstH2I RGCGCY 2 cut(s) 81, 217
BstHHI GCGC 2 cut(s) 80, 216
BstKTI GATC 2 cut(s) 58, 288
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 2 cut(s) 55, 285
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSCI CCNGG 3 cut(s) 125, 459, 488
BstSFI CTRYAG 1 cut(s) 115
BstUI CGCG 3 cut(s) 171, 248, 404
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
Bsu36I CCTNAGG 1 cut(s) 290
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 4 cut(s) 137, 152, 156, 226
CaiI CAGNNNCTG 1 cut(s) 73
CfoI GCGC 2 cut(s) 80, 216
Cfr10I RCCGGY 5 cut(s) 39, 154, 224, 259, 312
Cfr13I GGNCC 4 cut(s) 129, 243, 279, 451
Cfr42I CCGCGG 1 cut(s) 249
CseI GACGC 7 cut(s) 160, 177, 230, 240, 355, 393, 445
Csp6I GTAC 3 cut(s) 43, 145, 301
CspAI ACCGGT 1 cut(s) 39
CviJI RGCY 6 cut(s) 31, 120, 135, 154, 165, 459
CviKI_1 RGCY 6 cut(s) 31, 120, 135, 154, 165, 459
CviQI GTAC 3 cut(s) 43, 145, 301
DdeI CTNAG 2 cut(s) 290, 455
DinI GGCGCC 1 cut(s) 79
DpnI GATC 2 cut(s) 57, 287
DpnII GATC 2 cut(s) 55, 285
DrdI GACNNNNNNGTC 2 cut(s) 250, 365
DseDI GACNNNNNNGTC 2 cut(s) 250, 365
EciI GGCGGA 2 cut(s) 190, 331
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 4 cut(s) 129, 243, 279, 451
Eco47III AGCGCT 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 461
Eco81I CCTNAGG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 167
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 181
FaqI GGGAC 3 cut(s) 256, 353, 464
FauI CCCGC 3 cut(s) 176, 233, 378
Fnu4HI GCNGC 5 cut(s) 186, 249, 257, 322, 374
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 5 cut(s) 186, 249, 257, 322, 374
FspBI CTAG 2 cut(s) 9, 27
GlaI GCGC 2 cut(s) 79, 215
GluI GCNGC 5 cut(s) 186, 249, 257, 322, 374
HaeII RGCGCY 2 cut(s) 81, 217
HaeIII GGCC 1 cut(s) 31
HgaI GACGC 7 cut(s) 160, 177, 230, 240, 355, 393, 445
HhaI GCGC 2 cut(s) 80, 216
Hin1I GRCGYC 4 cut(s) 78, 188, 222, 251
Hin6I GCGC 2 cut(s) 78, 214
HinP1I GCGC 2 cut(s) 78, 214
HinfI GANTC 3 cut(s) 83, 104, 399
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 3 cut(s) 109, 220, 467
Hpy188III TCNNGA 4 cut(s) 49, 272, 289, 419
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 9 cut(s) 104, 176, 224, 256, 329, 338, 350, 362, 409
HpyAV CCTTC 2 cut(s) 416, 436
HpyCH4V TGCA 1 cut(s) 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 290, 455
Hsp92I GRCGYC 4 cut(s) 78, 188, 222, 251
HspAI GCGC 2 cut(s) 78, 214
KasI GGCGCC 1 cut(s) 77
Kpn2I TCCGGA 1 cut(s) 271
KpnI GGTACC 1 cut(s) 46
KroI GCCGGC 2 cut(s) 154, 224
KroNI GCCGGC 2 cut(s) 156, 226
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 2 cut(s) 55, 285
LmnI GCTCC 4 cut(s) 170, 221, 318, 363
Lsp1109I GCAGC 1 cut(s) 243
MaeI CTAG 2 cut(s) 9, 27
MalI GATC 2 cut(s) 57, 287
MbiI CCGCTC 1 cut(s) 321
MboI GATC 2 cut(s) 55, 285
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 1 cut(s) 474
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 2 cut(s) 77, 113
MmeI TCCRAC 2 cut(s) 132, 243
MnlI CCTC 8 cut(s) 56, 190, 214, 285, 384, 426, 441, 464
MreI CGCCGGCG 1 cut(s) 224
MroI TCCGGA 1 cut(s) 271
MroNI GCCGGC 2 cut(s) 154, 224
MseI TTAA 1 cut(s) 502
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 3 cut(s) 127, 461, 490
Mva1269I GAATGC 2 cut(s) 89, 267
MvnI CGCG 3 cut(s) 171, 248, 404
MwoI GCNNNNNNNGC 1 cut(s) 86
NaeI GCCGGC 2 cut(s) 156, 226
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 3 cut(s) 127, 461, 490
NdeII GATC 2 cut(s) 55, 285
NgoMIV GCCGGC 2 cut(s) 154, 224
NlaIV GGNNCC 4 cut(s) 44, 79, 244, 452
NmeAIII GCCGAG 2 cut(s) 65, 161
NspV TTCGAA 2 cut(s) 93, 495
PcsI WCGNNNNNNNCGW 7 cut(s) 99, 105, 333, 342, 354, 363, 401
PctI GAATGC 2 cut(s) 89, 267
PdiI GCCGGC 2 cut(s) 156, 226
PfeI GAWTC 1 cut(s) 399
PflMI CCANNNNNTGG 1 cut(s) 73
PinAI ACCGGT 1 cut(s) 39
PkrI GCNGC 5 cut(s) 187, 250, 258, 323, 375
PleI GAGTC 2 cut(s) 77, 112
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 2 cut(s) 77, 112
PpuMI RGGWCCY 1 cut(s) 451
Psp124BI GAGCTC 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 451
PspN4I GGNNCC 4 cut(s) 44, 79, 244, 452
PspPI GGNCC 4 cut(s) 129, 243, 279, 451
PspPPI RGGWCCY 1 cut(s) 451
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 3 cut(s) 44, 146, 302
RsaNI GTAC 3 cut(s) 43, 145, 301
SacI GAGCTC 1 cut(s) 167
SacII CCGCGG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 502
SatI GCNGC 5 cut(s) 186, 249, 257, 322, 374
Sau3AI GATC 2 cut(s) 55, 285
Sau96I GGNCC 4 cut(s) 129, 243, 279, 451
SchI GAGTC 2 cut(s) 77, 113
ScrFI CCNGG 3 cut(s) 127, 461, 490
SduI GDGCHC 1 cut(s) 167
SetI ASST 6 cut(s) 20, 48, 122, 137, 167, 456
SfcI CTRYAG 1 cut(s) 115
SfoI GGCGCC 1 cut(s) 79
Sfr303I CCGCGG 1 cut(s) 249
SfuI TTCGAA 2 cut(s) 93, 495
SgrAI CRCCGGYG 1 cut(s) 224
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 4 cut(s) 129, 243, 279, 451
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 1 cut(s) 474
SspDI GGCGCC 1 cut(s) 77
SspMI CTAG 2 cut(s) 9, 27
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 3 cut(s) 125, 459, 488
TaqI TCGA 4 cut(s) 93, 99, 357, 495
TasI AATT 1 cut(s) 474
TauI GCSGC 4 cut(s) 188, 251, 324, 376
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 502
Tru9I TTAA 1 cut(s) 502
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 256
TspRI CASTG 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 4 cut(s) 129, 243, 279, 451
XspI CTAG 2 cut(s) 9, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.