Rh5AG384300

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013237
Physical Location & Seq
Reverse (-)
66357265 .. 66363660
6396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG384300.1

Sequence Viewer

Length: 723 bp
ATGGCGACTAGTAAAACCTACTACGCTAGGCCGAACTACCGGTACCTCCCGACCGATCACCACCACCACCACCAGACACTGGGCGCCGACTCGGCATTCGAACTCGACGAGTCCGACATCTACAACTTCGCCCGGTCCAGCTCGCCGGAGTACCGGAAGCCGGCGATGAGCTCCCGCGTCGTCTCCTCGGCGGCGTCCAAGAAGTCCGCCTCGTCCAAGCGCTCCGACGCCGGCGACCGGAACGGCGGGACCGCGGCGTCGCTGCCGGTGGGCATTCCGGACTGGTCCAAGATCCTGAGGGACGAGTACCGAGAAAACCGGCGGAGCGGCGACGACGACGACGACTTGGACGACGAGTGCTTAGACGGGAGCGTGCGGGTCCCGCCGCACGAGTTTTTGGCGAGGCAGATGGCGAGGACGAGAATCGCGTCGTTCTCGGTCCACGAAGGCGTGGGGAGGACACTGAAGGGGAGGGATCTCAGCCGGGTCAGAAATGCAATTTGGGAAAAAACCGGTTTTGGCGTTGTAATATACAACACTTTAACTTGTGGAGCAACAACTATCATTATATTTTTTCAAAGGATATTTAAACAATCGAGGGAATCTGTCATTGGATCTCAGTTCTTCATGGACCAGATAGCAGATGAGAATTACTTTCAACAAAACCGCGTCGGCGGCCAGGTTTGTCTTCCTTCATTGATTGTTCAACAAGAGCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

240

Amino Acids

26.99

Weight (kDa)

7.06

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 18 - 173 2.7e-40 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 256
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 2 cut(s) 42, 83
AccB7I CCANNNNNTGG 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 327
AccII CGCG 4 cut(s) 177, 254, 428, 669
AccIII TCCGGA 1 cut(s) 277
AclWI GGATC 3 cut(s) 286, 483, 622
AcoI YGGCCR 1 cut(s) 676
AcuI CTGAAG 1 cut(s) 485
AcyI GRCGYC 4 cut(s) 84, 194, 228, 257
AfaI GTAC 3 cut(s) 44, 152, 308
AfeI AGCGCT 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 79, 160, 237
AgeI ACCGGT 2 cut(s) 39, 512
AgsI TTSAA 3 cut(s) 578, 659, 707
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 678
AjuI GAANNNNNNNTTGG 4 cut(s) 484, 516, 594, 626
AluBI AGCT 2 cut(s) 141, 171
AluI AGCT 2 cut(s) 141, 171
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 3 cut(s) 286, 483, 622
AlwNI CAGNNNCTG 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 277
Aor51HI AGCGCT 1 cut(s) 221
AoxI GGCC 2 cut(s) 29, 676
ApeKI GCWGC 1 cut(s) 262
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AsiGI ACCGGT 2 cut(s) 39, 512
Asp718I GGTACC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 86, 222
AspS9I GGNCC 6 cut(s) 135, 249, 285, 379, 439, 631
AsuC2I CCSGG 2 cut(s) 133, 485
AsuHPI GGTGA 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 99
AvaII GGWCC 6 cut(s) 135, 249, 285, 379, 439, 631
AxyI CCTNAGG 1 cut(s) 296
BanI GGYRCC 2 cut(s) 42, 83
BanII GRGCYC 1 cut(s) 173
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 403
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 680
BcnI CCSGG 2 cut(s) 133, 485
BcoDI GTCTC 1 cut(s) 187
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 27
BfoI RGCGCY 2 cut(s) 87, 223
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 6 cut(s) 192, 255, 263, 328, 386, 676
BlsI GCNGC 6 cut(s) 193, 256, 264, 329, 387, 677
Bme1390I CCNGG 3 cut(s) 133, 485, 680
Bme18I GGWCC 6 cut(s) 135, 249, 285, 379, 439, 631
BmgT120I GGNCC 6 cut(s) 135, 249, 285, 379, 439, 631
BmiI GGNNCC 5 cut(s) 44, 85, 250, 380, 381
BmrFI CCNGG 3 cut(s) 133, 485, 680
BmrI ACTGGG 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 680
Bpu14I TTCGAA 1 cut(s) 99
BpuMI CCSGG 2 cut(s) 133, 485
BsaHI GRCGYC 4 cut(s) 84, 194, 228, 257
BsaJI CCNNGG 2 cut(s) 186, 252
BsaWI WCCGGW 5 cut(s) 39, 153, 237, 277, 512
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 160, 237
Bse118I RCCGGY 6 cut(s) 39, 160, 230, 265, 318, 512
Bse1I ACTGG 2 cut(s) 84, 287
Bse21I CCTNAGG 1 cut(s) 296
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 2 cut(s) 186, 252
BseLI CCNNNNNNNGG 3 cut(s) 79, 160, 237
BseMII CTCAG 3 cut(s) 287, 493, 632
BseNI ACTGG 2 cut(s) 84, 287
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 249
Bsh1236I CGCG 4 cut(s) 177, 254, 428, 669
Bsh1285I CGRYCG 2 cut(s) 54, 238
BshFI GGCC 2 cut(s) 31, 678
BshNI GGYRCC 2 cut(s) 42, 83
BshTI ACCGGT 2 cut(s) 39, 512
BsiEI CGRYCG 2 cut(s) 54, 238
BsiHKAI GWGCWC 1 cut(s) 173
BslFI GGGAC 3 cut(s) 262, 314, 365
BslI CCNNNNNNNGG 3 cut(s) 79, 160, 237
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 3 cut(s) 262, 314, 365
BsmI GAATGC 2 cut(s) 95, 273
BsnI GGCC 2 cut(s) 31, 678
Bsp119I TTCGAA 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 4 cut(s) 55, 291, 475, 614
BspANI GGCC 2 cut(s) 31, 678
BspCNI CTCAG 3 cut(s) 288, 492, 631
BspEI TCCGGA 1 cut(s) 277
BspFNI CGCG 4 cut(s) 177, 254, 428, 669
BspLI GGNNCC 5 cut(s) 44, 85, 250, 380, 381
BspPI GGATC 3 cut(s) 286, 483, 622
BspT104I TTCGAA 1 cut(s) 99
BspT107I GGYRCC 2 cut(s) 42, 83
BsrBI CCGCTC 1 cut(s) 327
BsrFI RCCGGY 6 cut(s) 39, 160, 230, 265, 318, 512
BsrI ACTGG 2 cut(s) 84, 287
BssAI RCCGGY 6 cut(s) 39, 160, 230, 265, 318, 512
BssECI CCNNGG 2 cut(s) 186, 252
BssMI GATC 4 cut(s) 55, 291, 475, 614
BssNI GRCGYC 4 cut(s) 84, 194, 228, 257
BssSI CACGAG 1 cut(s) 389
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 680
BstACI GRCGYC 4 cut(s) 84, 194, 228, 257
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 5 cut(s) 143, 162, 232, 374, 717
BstDEI CTNAG 4 cut(s) 296, 361, 479, 618
BstDSI CCRYGG 1 cut(s) 252
BstFNI CGCG 4 cut(s) 177, 254, 428, 669
BstH2I RGCGCY 2 cut(s) 87, 223
BstHHI GCGC 2 cut(s) 86, 222
BstKTI GATC 4 cut(s) 58, 294, 478, 617
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 4 cut(s) 55, 291, 475, 614
BstMCI CGRYCG 2 cut(s) 54, 238
BstMWI GCNNNNNNNGC 3 cut(s) 92, 382, 675
BstNI CCWGG 1 cut(s) 680
BstSCI CCNGG 3 cut(s) 131, 483, 678
BstUI CGCG 4 cut(s) 177, 254, 428, 669
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 680
BstX2I RGATCY 3 cut(s) 291, 475, 614
BstYI RGATCY 3 cut(s) 291, 475, 614
Bsu36I CCTNAGG 1 cut(s) 296
BsuRI GGCC 2 cut(s) 31, 678
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 179
BtsIMutI CAGTG 2 cut(s) 77, 461
Cac8I GCNNGC 5 cut(s) 143, 162, 232, 374, 717
CaiI CAGNNNCTG 1 cut(s) 79
CfoI GCGC 2 cut(s) 86, 222
Cfr10I RCCGGY 6 cut(s) 39, 160, 230, 265, 318, 512
Cfr13I GGNCC 6 cut(s) 135, 249, 285, 379, 439, 631
Cfr42I CCGCGG 1 cut(s) 255
CseI GACGC 6 cut(s) 166, 183, 236, 246, 417, 658
Csp6I GTAC 3 cut(s) 43, 151, 307
CspAI ACCGGT 2 cut(s) 39, 512
CviAII CATG 1 cut(s) 628
CviJI RGCY 6 cut(s) 31, 141, 160, 171, 483, 678
CviKI_1 RGCY 6 cut(s) 31, 141, 160, 171, 483, 678
CviQI GTAC 3 cut(s) 43, 151, 307
DdeI CTNAG 4 cut(s) 296, 361, 479, 618
DinI GGCGCC 1 cut(s) 85
DpnI GATC 4 cut(s) 57, 293, 477, 616
DpnII GATC 4 cut(s) 55, 291, 475, 614
DraI TTTAAA 1 cut(s) 589
DrdI GACNNNNNNGTC 1 cut(s) 256
DseDI GACNNNNNNGTC 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 676
EciI GGCGGA 2 cut(s) 196, 337
Ecl136II GAGCTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 173
Eco47I GGWCC 6 cut(s) 135, 249, 285, 379, 439, 631
Eco47III AGCGCT 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 485
Eco81I CCTNAGG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 173
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 1 cut(s) 631
FaiI YATR 4 cut(s) 532, 569, 629, 721
FaqI GGGAC 3 cut(s) 262, 314, 365
FatI CATG 1 cut(s) 627
FauI CCCGC 4 cut(s) 182, 239, 369, 390
Fnu4HI GCNGC 6 cut(s) 192, 255, 263, 328, 386, 676
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 6 cut(s) 192, 255, 263, 328, 386, 676
FspBI CTAG 2 cut(s) 9, 27
GlaI GCGC 2 cut(s) 85, 221
GluI GCNGC 6 cut(s) 192, 255, 263, 328, 386, 676
HaeII RGCGCY 2 cut(s) 87, 223
HaeIII GGCC 2 cut(s) 31, 678
HgaI GACGC 6 cut(s) 166, 183, 236, 246, 417, 658
HhaI GCGC 2 cut(s) 86, 222
Hin1I GRCGYC 4 cut(s) 84, 194, 228, 257
Hin1II CATG 1 cut(s) 631
Hin6I GCGC 2 cut(s) 84, 220
HinP1I GCGC 2 cut(s) 84, 220
HinfI GANTC 4 cut(s) 89, 110, 423, 602
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 115, 226, 491
Hpy188III TCNNGA 3 cut(s) 49, 278, 295
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 3 cut(s) 440, 460, 702
HpyCH4V TGCA 1 cut(s) 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 382, 675
HpyF3I CTNAG 4 cut(s) 296, 361, 479, 618
Hsp92I GRCGYC 4 cut(s) 84, 194, 228, 257
Hsp92II CATG 1 cut(s) 631
HspAI GCGC 2 cut(s) 84, 220
KasI GGCGCC 1 cut(s) 83
KflI GGGWCCC 1 cut(s) 379
Kpn2I TCCGGA 1 cut(s) 277
KpnI GGTACC 1 cut(s) 46
KroI GCCGGC 2 cut(s) 160, 230
KroNI GCCGGC 2 cut(s) 162, 232
KspI CCGCGG 1 cut(s) 255
Kzo9I GATC 4 cut(s) 55, 291, 475, 614
LmnI GCTCC 5 cut(s) 176, 227, 324, 369, 551
Lsp1109I GCAGC 1 cut(s) 249
MaeI CTAG 2 cut(s) 9, 27
MalI GATC 4 cut(s) 57, 293, 477, 616
MbiI CCGCTC 1 cut(s) 327
MboI GATC 4 cut(s) 55, 291, 475, 614
MboII GAAGA 2 cut(s) 616, 680
MflI RGATCY 3 cut(s) 291, 475, 614
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 2 cut(s) 498, 649
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 2 cut(s) 83, 119
MmeI TCCRAC 2 cut(s) 138, 249
MnlI CCTC 9 cut(s) 56, 196, 220, 291, 396, 408, 450, 465, 591
MreI CGCCGGCG 1 cut(s) 230
MroI TCCGGA 1 cut(s) 277
MroNI GCCGGC 2 cut(s) 160, 230
MseI TTAA 2 cut(s) 542, 588
MspA1I CMGCKG 1 cut(s) 254
MspR9I CCNGG 3 cut(s) 133, 485, 680
Mva1269I GAATGC 2 cut(s) 95, 273
MvaI CCWGG 1 cut(s) 680
MvnI CGCG 4 cut(s) 177, 254, 428, 669
MwoI GCNNNNNNNGC 3 cut(s) 92, 382, 675
NaeI GCCGGC 2 cut(s) 162, 232
NarI GGCGCC 1 cut(s) 84
NciI CCSGG 2 cut(s) 133, 485
NdeII GATC 4 cut(s) 55, 291, 475, 614
NgoMIV GCCGGC 2 cut(s) 160, 230
NlaIII CATG 1 cut(s) 631
NlaIV GGNNCC 5 cut(s) 44, 85, 250, 380, 381
NmeAIII GCCGAG 2 cut(s) 71, 167
NspV TTCGAA 1 cut(s) 99
PcsI WCGNNNNNNNCGW 5 cut(s) 105, 111, 339, 348, 425
PctI GAATGC 2 cut(s) 95, 273
PdiI GCCGGC 2 cut(s) 162, 232
PfeI GAWTC 2 cut(s) 423, 602
PflMI CCANNNNNTGG 1 cut(s) 79
PinAI ACCGGT 2 cut(s) 39, 512
PkrI GCNGC 6 cut(s) 193, 256, 264, 329, 387, 677
PleI GAGTC 2 cut(s) 83, 118
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 2 cut(s) 83, 118
PpuMI RGGWCCY 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 5 cut(s) 44, 85, 250, 380, 381
PspPI GGNCC 6 cut(s) 135, 249, 285, 379, 439, 631
PspPPI RGGWCCY 1 cut(s) 379
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 3 cut(s) 291, 475, 614
RsaI GTAC 3 cut(s) 44, 152, 308
RsaNI GTAC 3 cut(s) 43, 151, 307
SacI GAGCTC 1 cut(s) 173
SacII CCGCGG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 542, 588
SatI GCNGC 6 cut(s) 192, 255, 263, 328, 386, 676
Sau3AI GATC 4 cut(s) 55, 291, 475, 614
Sau96I GGNCC 6 cut(s) 135, 249, 285, 379, 439, 631
SchI GAGTC 2 cut(s) 83, 119
ScrFI CCNGG 3 cut(s) 133, 485, 680
SduI GDGCHC 1 cut(s) 173
SetI ASST 5 cut(s) 20, 48, 143, 173, 684
SfoI GGCGCC 1 cut(s) 85
Sfr303I CCGCGG 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 99
SgrAI CRCCGGYG 1 cut(s) 230
SgrBI CCGCGG 1 cut(s) 255
SinI GGWCC 6 cut(s) 135, 249, 285, 379, 439, 631
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 2 cut(s) 498, 649
SspDI GGCGCC 1 cut(s) 83
SspMI CTAG 2 cut(s) 9, 27
SstI GAGCTC 1 cut(s) 173
StyD4I CCNGG 3 cut(s) 131, 483, 678
TaqI TCGA 3 cut(s) 99, 105, 596
TaqII GACCGA 2 cut(s) 68, 427
TasI AATT 2 cut(s) 498, 649
TauI GCSGC 5 cut(s) 194, 257, 330, 388, 678
TfiI GAWTC 2 cut(s) 423, 602
Tru1I TTAA 2 cut(s) 542, 588
Tru9I TTAA 2 cut(s) 542, 588
TscAI CASTG 2 cut(s) 84, 468
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 616, 684
TspRI CASTG 2 cut(s) 84, 468
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 6 cut(s) 135, 249, 285, 379, 439, 631
XspI CTAG 2 cut(s) 9, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.