MD03G1118100.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0013237
Physical Location & Seq
Forward (+)
10681268 .. 10681765
498 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1118100.v1.1.491

Sequence Viewer

Length: 498 bp
ATGGCGACTACTAAGAGCTACTACGCTAGGCCGAACTACCGGTATCTCACCAGCGACCACCAGCACCAAACCCTATCGTCCGATTTCGAGCTCGATGAGTCGGACATCTACAAGTCCAGCTCGCCGGAGTTCCGCAAACCGGTTCCGAACTCCCGCGGCATCTCGTCGTCGAAGAACCGGCGGGGAGATGCCGGAGACCGGTCGGACCGGACCTGCGGCACGCCGTCTTCGTTGCCGGTCGGCATTCCGGACTGGTCTAAGATCTTGAGAGATGAGTACAGGGAGAAACGGAGGAGCGAGGACGACGACGAGGCGGACGGCGAGGACGACGTGGAGGGAGGCGTGCGGATCCCGCCGCACGAGTTGTTGGCGAGGCAGATGGCGAGAACGAGAATCGCGTCGTTCTCGGTGCACGAAGGCGTCGGGAGGACATTGAAAGGGAGGGATCTCAGTCGGGTCCGAAATGCAATTTGGGAAAAAACTGGGTTCGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

166

Amino Acids

18.78

Weight (kDa)

6.12

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 19 - 165 7.5e-40 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 221
AccII CGCG 2 cut(s) 156, 398
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 9 cut(s) 133, 154, 156, 181, 216, 314, 346, 353, 356
AclWI GGATC 3 cut(s) 343, 356, 453
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 139, 198
AgeI ACCGGT 3 cut(s) 39, 139, 198
AgsI TTSAA 1 cut(s) 436
AjiI CACGTC 1 cut(s) 331
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
AluBI AGCT 3 cut(s) 18, 91, 120
AluI AGCT 3 cut(s) 18, 91, 120
Alw21I GWGCWC 2 cut(s) 93, 414
Alw26I GTCTC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 410
AlwI GGATC 3 cut(s) 343, 356, 453
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 1 cut(s) 29
ApaLI GTGCAC 1 cut(s) 410
AsiGI ACCGGT 3 cut(s) 39, 139, 198
AspS9I GGNCC 3 cut(s) 205, 210, 457
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 489
AvaII GGWCC 3 cut(s) 205, 210, 457
BaeGI GKGCMC 1 cut(s) 414
BamHI GGATCC 1 cut(s) 348
BanII GRGCYC 1 cut(s) 93
BauI CACGAG 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 2 cut(s) 93, 414
BccI CCATC 1 cut(s) 373
BceAI ACGGC 2 cut(s) 208, 334
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 221
BglII AGATCT 1 cut(s) 261
BisI GCNGC 3 cut(s) 157, 217, 356
BlsI GCNGC 3 cut(s) 158, 218, 357
Bme18I GGWCC 3 cut(s) 205, 210, 457
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 205, 210, 457
BmiI GGNNCC 3 cut(s) 144, 350, 458
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 2 cut(s) 168, 178
BmuI ACTGGG 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 154
BsaWI WCCGGW 5 cut(s) 39, 139, 198, 207, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 198
Bse118I RCCGGY 5 cut(s) 39, 139, 177, 198, 235
Bse1I ACTGG 2 cut(s) 257, 487
BseAI TCCGGA 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 139, 198
BseMII CTCAG 1 cut(s) 463
BseNI ACTGG 2 cut(s) 257, 487
BseRI GAGGAG 1 cut(s) 307
BseSI GKGCMC 1 cut(s) 414
Bsh1236I CGCG 2 cut(s) 156, 398
Bsh1285I CGRYCG 2 cut(s) 203, 240
BshFI GGCC 1 cut(s) 31
BshTI ACCGGT 3 cut(s) 39, 139, 198
BsiEI CGRYCG 2 cut(s) 203, 240
BsiHKAI GWGCWC 2 cut(s) 93, 414
BsiSI CCGG 9 cut(s) 40, 125, 140, 178, 192, 199, 208, 236, 248
BslI CCNNNNNNNGG 2 cut(s) 139, 198
BsmAI GTCTC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 243
BsnI GGCC 1 cut(s) 31
Bso31I GGTCTC 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 93, 414
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 3 cut(s) 261, 348, 445
BspACI CCGC 9 cut(s) 133, 154, 156, 181, 216, 314, 346, 353, 356
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 462
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 2 cut(s) 156, 398
BspLI GGNNCC 3 cut(s) 144, 350, 458
BspMI ACCTGC 1 cut(s) 221
BspPI GGATC 3 cut(s) 343, 356, 453
BspT104I TTCGAA 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 189
BsrFI RCCGGY 5 cut(s) 39, 139, 177, 198, 235
BsrI ACTGG 2 cut(s) 257, 487
BssAI RCCGGY 5 cut(s) 39, 139, 177, 198, 235
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 261, 348, 445
BssNI GRCGYC 1 cut(s) 420
BssSI CACGAG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 359
BstACI GRCGYC 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 3 cut(s) 122, 221, 344
BstDEI CTNAG 3 cut(s) 12, 258, 449
BstDSI CCRYGG 1 cut(s) 154
BstFNI CGCG 2 cut(s) 156, 398
BstKTI GATC 3 cut(s) 264, 351, 448
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 3 cut(s) 261, 348, 445
BstMCI CGRYCG 2 cut(s) 203, 240
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 414
BstUI CGCG 2 cut(s) 156, 398
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 3 cut(s) 261, 348, 445
BstYI RGATCY 3 cut(s) 261, 348, 445
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 154
BtrI CACGTC 1 cut(s) 331
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 3 cut(s) 122, 221, 344
Cfr10I RCCGGY 5 cut(s) 39, 139, 177, 198, 235
Cfr13I GGNCC 3 cut(s) 205, 210, 457
Cfr42I CCGCGG 1 cut(s) 157
CpoI CGGWCCG 1 cut(s) 205
CseI GACGC 2 cut(s) 387, 409
Csp6I GTAC 1 cut(s) 277
CspAI ACCGGT 3 cut(s) 39, 139, 198
CspI CGGWCCG 1 cut(s) 205
CviJI RGCY 4 cut(s) 18, 31, 91, 120
CviKI_1 RGCY 4 cut(s) 18, 31, 91, 120
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 3 cut(s) 12, 258, 449
DpnI GATC 3 cut(s) 263, 350, 447
DpnII GATC 3 cut(s) 261, 348, 445
EciI GGCGGA 1 cut(s) 329
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 3 cut(s) 205, 210, 457
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 93
FauI CCCGC 3 cut(s) 161, 174, 360
Fnu4HI GCNGC 3 cut(s) 157, 217, 356
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 157, 217, 356
FspBI CTAG 1 cut(s) 27
GluI GCNGC 3 cut(s) 157, 217, 356
HaeIII GGCC 1 cut(s) 31
HapII CCGG 9 cut(s) 40, 125, 140, 178, 192, 199, 208, 236, 248
HgaI GACGC 2 cut(s) 387, 409
Hin1I GRCGYC 1 cut(s) 420
HinfI GANTC 2 cut(s) 98, 393
HpaII CCGG 9 cut(s) 40, 125, 140, 178, 192, 199, 208, 236, 248
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 5 cut(s) 82, 103, 147, 205, 461
Hpy188III TCNNGA 3 cut(s) 248, 265, 424
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 7 cut(s) 169, 172, 308, 311, 332, 403, 425
HpyAV CCTTC 1 cut(s) 410
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 412, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 3 cut(s) 12, 258, 449
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 420
Kpn2I TCCGGA 1 cut(s) 247
KspI CCGCGG 1 cut(s) 157
Kzo9I GATC 3 cut(s) 261, 348, 445
LmnI GCTCC 1 cut(s) 294
LweI GCATC 2 cut(s) 168, 178
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 330
MalI GATC 3 cut(s) 263, 350, 447
MboI GATC 3 cut(s) 261, 348, 445
MboII GAAGA 2 cut(s) 184, 219
MflI RGATCY 3 cut(s) 261, 348, 445
MhlI GDGCHC 2 cut(s) 93, 414
MluCI AATT 1 cut(s) 468
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 2 cut(s) 81, 183
MnlI CCTC 9 cut(s) 285, 292, 304, 316, 328, 332, 366, 420, 435
MroI TCCGGA 1 cut(s) 247
MseI TTAA 1 cut(s) 496
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 9 cut(s) 40, 125, 140, 178, 192, 199, 208, 236, 248
Mva1269I GAATGC 1 cut(s) 243
MvnI CGCG 2 cut(s) 156, 398
MwoI GCNNNNNNNGC 1 cut(s) 352
NdeII GATC 3 cut(s) 261, 348, 445
NlaIV GGNNCC 3 cut(s) 144, 350, 458
NspV TTCGAA 1 cut(s) 489
PcsI WCGNNNNNNNCGW 3 cut(s) 227, 324, 395
PctI GAATGC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 393
PinAI ACCGGT 3 cut(s) 39, 139, 198
PkrI GCNGC 3 cut(s) 158, 218, 357
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 93
PspN4I GGNNCC 3 cut(s) 144, 350, 458
PspPI GGNCC 3 cut(s) 205, 210, 457
PsuI RGATCY 3 cut(s) 261, 348, 445
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
Rsr2I CGGWCCG 1 cut(s) 205
RsrII CGGWCCG 1 cut(s) 205
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 157
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 3 cut(s) 157, 217, 356
Sau3AI GATC 3 cut(s) 261, 348, 445
Sau96I GGNCC 3 cut(s) 205, 210, 457
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 2 cut(s) 93, 414
SetI ASST 5 cut(s) 20, 93, 122, 215, 333
SfaNI GCATC 2 cut(s) 168, 178
Sfr303I CCGCGG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 489
SgrBI CCGCGG 1 cut(s) 157
SinI GGWCC 3 cut(s) 205, 210, 457
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 1 cut(s) 468
SsiI CCGC 9 cut(s) 133, 154, 156, 181, 216, 314, 346, 353, 356
SspMI CTAG 1 cut(s) 27
SstI GAGCTC 1 cut(s) 93
TaiI ACGT 1 cut(s) 333
TaqI TCGA 4 cut(s) 87, 93, 170, 489
TasI AATT 1 cut(s) 468
TatI WGTACW 1 cut(s) 276
TauI GCSGC 3 cut(s) 159, 219, 358
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TspGWI ACGGA 1 cut(s) 304
VneI GTGCAC 1 cut(s) 410
VpaK11BI GGWCC 3 cut(s) 205, 210, 457
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.