Rw5G036210

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0013237
Physical Location & Seq
Reverse (-)
63509481 .. 63510596
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G036210.1

Sequence Viewer

Length: 513 bp
ATGGCGACTAGTAAAACCTACTACGCTAGGCCGAACTACCGGTACCTCCCGACCGATCACCACCACCAGACACTGGGCGCCGACTCGGCATTCGAACTCGACGAGTCCGACATCTACAACTTCGCCCGGTCCAGCTCGCCGGAGTACCGGAAGCCGGCGATGAGCTCCCGCGTCGTCTCCTCGGCGGCGTCCAAGAATTCCGCATCGTCCAAGCGGTCCGACGCCGGCGACCGGAACGGCGGGACCGCGGCGTCGCTGCCGGTGGGCATTCCGGACTGGTCCAAGATCCTGAGGGACGAGTACCGAGAAAACCGGCGGAGCGGGGACGACGACGACGACGAGTGCTTAGACGGGAGCGTGCGGGTCCCGCCGCACGAGTTTTTGGCGAGGCAGATGGCGAGGACGAGAATCGCGTCGTTCTCGGTCCACGAAGGCGTGGGGAGGACGCTGAAGGGGAGGGATCTCAGCCGGGTCAGAAATGCAATTTGGGAAAAAACCGGGTTCGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

170

Amino Acids

19.03

Weight (kDa)

6.98

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 20 - 170 5.2e-41 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 2 cut(s) 42, 77
AccB7I CCANNNNNTGG 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 321
AccII CGCG 3 cut(s) 171, 248, 413
AccIII TCCGGA 1 cut(s) 271
AclWI GGATC 2 cut(s) 280, 468
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 470
AcyI GRCGYC 4 cut(s) 78, 188, 222, 251
AfaI GTAC 3 cut(s) 44, 146, 302
AfiI CCNNNNNNNGG 3 cut(s) 73, 154, 231
AgeI ACCGGT 1 cut(s) 39
AhlI ACTAGT 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
AluBI AGCT 2 cut(s) 135, 165
AluI AGCT 2 cut(s) 135, 165
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 2 cut(s) 280, 468
AlwNI CAGNNNCTG 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 196
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AsiGI ACCGGT 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 6 cut(s) 129, 216, 243, 279, 364, 424
AsuC2I CCSGG 3 cut(s) 127, 470, 499
AsuHPI GGTGA 1 cut(s) 50
AsuII TTCGAA 2 cut(s) 93, 504
AvaII GGWCC 6 cut(s) 129, 216, 243, 279, 364, 424
AxyI CCTNAGG 1 cut(s) 290
BanI GGYRCC 2 cut(s) 42, 77
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 243
BccI CCATC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 253
BcnI CCSGG 3 cut(s) 127, 470, 499
BcoDI GTCTC 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 27
BfoI RGCGCY 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 4 cut(s) 186, 249, 257, 371
BlsI GCNGC 4 cut(s) 187, 250, 258, 372
Bme1390I CCNGG 3 cut(s) 127, 470, 499
Bme18I GGWCC 6 cut(s) 129, 216, 243, 279, 364, 424
BmgT120I GGNCC 6 cut(s) 129, 216, 243, 279, 364, 424
BmiI GGNNCC 5 cut(s) 44, 79, 244, 365, 366
BmrFI CCNGG 3 cut(s) 127, 470, 499
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 83
Bpu14I TTCGAA 2 cut(s) 93, 504
BpuMI CCSGG 3 cut(s) 127, 470, 499
BsaHI GRCGYC 4 cut(s) 78, 188, 222, 251
BsaJI CCNNGG 2 cut(s) 180, 246
BsaWI WCCGGW 4 cut(s) 39, 147, 231, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 154, 231
Bse118I RCCGGY 5 cut(s) 39, 154, 224, 259, 312
Bse1I ACTGG 2 cut(s) 78, 281
Bse21I CCTNAGG 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 180, 246
BseLI CCNNNNNNNGG 3 cut(s) 73, 154, 231
BseMII CTCAG 2 cut(s) 281, 478
BseNI ACTGG 2 cut(s) 78, 281
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 243
Bsh1236I CGCG 3 cut(s) 171, 248, 413
Bsh1285I CGRYCG 2 cut(s) 54, 232
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 2 cut(s) 42, 77
BshTI ACCGGT 1 cut(s) 39
BsiEI CGRYCG 2 cut(s) 54, 232
BsiHKAI GWGCWC 1 cut(s) 167
BslFI GGGAC 4 cut(s) 256, 308, 338, 350
BslI CCNNNNNNNGG 3 cut(s) 73, 154, 231
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 4 cut(s) 256, 308, 338, 350
BsmI GAATGC 2 cut(s) 89, 267
BsnI GGCC 1 cut(s) 31
Bsp119I TTCGAA 2 cut(s) 93, 504
Bsp1286I GDGCHC 1 cut(s) 167
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 3 cut(s) 55, 285, 460
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 282, 477
BspEI TCCGGA 1 cut(s) 271
BspFNI CGCG 3 cut(s) 171, 248, 413
BspLI GGNNCC 5 cut(s) 44, 79, 244, 365, 366
BspPI GGATC 2 cut(s) 280, 468
BspT104I TTCGAA 2 cut(s) 93, 504
BspT107I GGYRCC 2 cut(s) 42, 77
BsrBI CCGCTC 1 cut(s) 321
BsrFI RCCGGY 5 cut(s) 39, 154, 224, 259, 312
BsrI ACTGG 2 cut(s) 78, 281
BssAI RCCGGY 5 cut(s) 39, 154, 224, 259, 312
BssECI CCNNGG 2 cut(s) 180, 246
BssMI GATC 3 cut(s) 55, 285, 460
BssNI GRCGYC 4 cut(s) 78, 188, 222, 251
BssSI CACGAG 1 cut(s) 374
Bst2BI CACGAG 1 cut(s) 374
BstACI GRCGYC 4 cut(s) 78, 188, 222, 251
BstBI TTCGAA 2 cut(s) 93, 504
BstC8I GCNNGC 4 cut(s) 137, 156, 226, 359
BstDEI CTNAG 3 cut(s) 290, 346, 464
BstDSI CCRYGG 1 cut(s) 246
BstFNI CGCG 3 cut(s) 171, 248, 413
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 58, 288, 463
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 3 cut(s) 55, 285, 460
BstMCI CGRYCG 2 cut(s) 54, 232
BstMWI GCNNNNNNNGC 2 cut(s) 86, 367
BstSCI CCNGG 3 cut(s) 125, 468, 497
BstUI CGCG 3 cut(s) 171, 248, 413
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 2 cut(s) 285, 460
BstYI RGATCY 2 cut(s) 285, 460
Bsu36I CCTNAGG 1 cut(s) 290
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 4 cut(s) 137, 156, 226, 359
CaiI CAGNNNCTG 1 cut(s) 73
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 5 cut(s) 39, 154, 224, 259, 312
Cfr13I GGNCC 6 cut(s) 129, 216, 243, 279, 364, 424
Cfr42I CCGCGG 1 cut(s) 249
CpoI CGGWCCG 1 cut(s) 216
CseI GACGC 6 cut(s) 160, 177, 230, 240, 402, 454
Csp6I GTAC 3 cut(s) 43, 145, 301
CspAI ACCGGT 1 cut(s) 39
CspI CGGWCCG 1 cut(s) 216
CviJI RGCY 5 cut(s) 31, 135, 154, 165, 468
CviKI_1 RGCY 5 cut(s) 31, 135, 154, 165, 468
CviQI GTAC 3 cut(s) 43, 145, 301
DdeI CTNAG 3 cut(s) 290, 346, 464
DinI GGCGCC 1 cut(s) 79
DpnI GATC 3 cut(s) 57, 287, 462
DpnII GATC 3 cut(s) 55, 285, 460
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
EciI GGCGGA 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 6 cut(s) 129, 216, 243, 279, 364, 424
Eco53kI GAGCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 470
Eco81I CCTNAGG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 167
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 181
FaqI GGGAC 4 cut(s) 256, 308, 338, 350
FauI CCCGC 5 cut(s) 176, 233, 314, 354, 375
Fnu4HI GCNGC 4 cut(s) 186, 249, 257, 371
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 4 cut(s) 186, 249, 257, 371
FspBI CTAG 2 cut(s) 9, 27
GlaI GCGC 1 cut(s) 79
GluI GCNGC 4 cut(s) 186, 249, 257, 371
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 1 cut(s) 31
HgaI GACGC 6 cut(s) 160, 177, 230, 240, 402, 454
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 4 cut(s) 78, 188, 222, 251
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 3 cut(s) 83, 104, 408
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 3 cut(s) 109, 220, 476
Hpy188III TCNNGA 3 cut(s) 49, 272, 289
Hpy8I GTNNAC 1 cut(s) 427
Hpy99I CGWCG 9 cut(s) 104, 176, 224, 256, 332, 335, 338, 341, 418
HpyAV CCTTC 2 cut(s) 425, 445
HpyCH4V TGCA 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 367
HpyF3I CTNAG 3 cut(s) 290, 346, 464
Hsp92I GRCGYC 4 cut(s) 78, 188, 222, 251
HspAI GCGC 1 cut(s) 78
KasI GGCGCC 1 cut(s) 77
KflI GGGWCCC 1 cut(s) 364
Kpn2I TCCGGA 1 cut(s) 271
KpnI GGTACC 1 cut(s) 46
KroI GCCGGC 2 cut(s) 154, 224
KroNI GCCGGC 2 cut(s) 156, 226
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 3 cut(s) 55, 285, 460
LmnI GCTCC 3 cut(s) 170, 318, 354
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 212
MaeI CTAG 2 cut(s) 9, 27
MalI GATC 3 cut(s) 57, 287, 462
MbiI CCGCTC 1 cut(s) 321
MboI GATC 3 cut(s) 55, 285, 460
MflI RGATCY 2 cut(s) 285, 460
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 2 cut(s) 196, 483
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 2 cut(s) 77, 113
MmeI TCCRAC 2 cut(s) 132, 243
MnlI CCTC 7 cut(s) 56, 190, 285, 381, 393, 435, 450
MreI CGCCGGCG 1 cut(s) 224
MroI TCCGGA 1 cut(s) 271
MroNI GCCGGC 2 cut(s) 154, 224
MseI TTAA 1 cut(s) 511
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 3 cut(s) 127, 470, 499
Mva1269I GAATGC 2 cut(s) 89, 267
MvnI CGCG 3 cut(s) 171, 248, 413
MwoI GCNNNNNNNGC 2 cut(s) 86, 367
NaeI GCCGGC 2 cut(s) 156, 226
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 3 cut(s) 127, 470, 499
NdeII GATC 3 cut(s) 55, 285, 460
NgoMIV GCCGGC 2 cut(s) 154, 224
NlaIV GGNNCC 5 cut(s) 44, 79, 244, 365, 366
NmeAIII GCCGAG 2 cut(s) 65, 161
NspV TTCGAA 2 cut(s) 93, 504
PcsI WCGNNNNNNNCGW 5 cut(s) 99, 105, 333, 336, 410
PctI GAATGC 2 cut(s) 89, 267
PdiI GCCGGC 2 cut(s) 156, 226
PfeI GAWTC 1 cut(s) 408
PflMI CCANNNNNTGG 1 cut(s) 73
PinAI ACCGGT 1 cut(s) 39
PkrI GCNGC 4 cut(s) 187, 250, 258, 372
PleI GAGTC 2 cut(s) 77, 112
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 2 cut(s) 77, 112
PpuMI RGGWCCY 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 364
PspN4I GGNNCC 5 cut(s) 44, 79, 244, 365, 366
PspPI GGNCC 6 cut(s) 129, 216, 243, 279, 364, 424
PspPPI RGGWCCY 1 cut(s) 364
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 2 cut(s) 285, 460
RsaI GTAC 3 cut(s) 44, 146, 302
RsaNI GTAC 3 cut(s) 43, 145, 301
Rsr2I CGGWCCG 1 cut(s) 216
RsrII CGGWCCG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 167
SacII CCGCGG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 511
SatI GCNGC 4 cut(s) 186, 249, 257, 371
Sau3AI GATC 3 cut(s) 55, 285, 460
Sau96I GGNCC 6 cut(s) 129, 216, 243, 279, 364, 424
SchI GAGTC 2 cut(s) 77, 113
ScrFI CCNGG 3 cut(s) 127, 470, 499
SduI GDGCHC 1 cut(s) 167
SetI ASST 4 cut(s) 20, 48, 137, 167
SfaNI GCATC 1 cut(s) 212
SfoI GGCGCC 1 cut(s) 79
Sfr303I CCGCGG 1 cut(s) 249
SfuI TTCGAA 2 cut(s) 93, 504
SgrAI CRCCGGYG 1 cut(s) 224
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 6 cut(s) 129, 216, 243, 279, 364, 424
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 2 cut(s) 196, 483
SspDI GGCGCC 1 cut(s) 77
SspMI CTAG 2 cut(s) 9, 27
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 3 cut(s) 125, 468, 497
TaqI TCGA 3 cut(s) 93, 99, 504
TaqII GACCGA 2 cut(s) 68, 412
TasI AATT 2 cut(s) 196, 483
TauI GCSGC 3 cut(s) 188, 251, 373
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 1 cut(s) 511
Tru9I TTAA 1 cut(s) 511
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 256
TspRI CASTG 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 6 cut(s) 129, 216, 243, 279, 364, 424
XapI RAATTY 1 cut(s) 196
XspI CTAG 2 cut(s) 9, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.