Rmu_co8262839.1_g000001

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8262839.1
OG0013237
Physical Location & Seq
Forward (+)
1 .. 224
224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8262839.1_g000001.1.cds

Sequence Viewer

Length: 224 bp
tgagggacgagtaccgagaaaaccggcggagcggggacgacgacgacgacgagtgcttagacgggagcgtgcgggtcccgccgcacgagtttttggcgaggcagatggcgaggacgagaatcgcgtcgttctcggtccacgaaggcgtggggaggacgctgaaggggagggatctcagccgggtcagaaatgcaatttgggaaaaaaccgggttcgaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

73

Amino Acids

8.48

Weight (kDa)

5.67

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 32
AccII CGCG 1 cut(s) 124
AciI CCGC 5 cut(s) 27, 32, 72, 79, 82
AclWI GGATC 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 181
AfaI GTAC 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AlwI GGATC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 75, 135
AsuC2I CCSGG 2 cut(s) 181, 210
AsuII TTCGAA 1 cut(s) 215
AvaII GGWCC 2 cut(s) 75, 135
BauI CACGAG 1 cut(s) 85
BccI CCATC 1 cut(s) 99
BcnI CCSGG 2 cut(s) 181, 210
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 2 cut(s) 181, 210
Bme18I GGWCC 2 cut(s) 75, 135
BmgT120I GGNCC 2 cut(s) 75, 135
BmiI GGNNCC 2 cut(s) 76, 77
BmrFI CCNGG 2 cut(s) 181, 210
Bpu14I TTCGAA 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 181, 210
Bse118I RCCGGY 1 cut(s) 23
BseMII CTCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 124
BsiSI CCGG 3 cut(s) 24, 180, 209
BslFI GGGAC 3 cut(s) 19, 49, 61
BsmFI GGGAC 3 cut(s) 19, 49, 61
Bsp119I TTCGAA 1 cut(s) 215
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 5 cut(s) 27, 32, 72, 79, 82
BspCNI CTCAG 1 cut(s) 188
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 76, 77
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssMI GATC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 57, 175
BstFNI CGCG 1 cut(s) 124
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 179, 208
BstUI CGCG 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 75, 135
CseI GACGC 2 cut(s) 113, 165
Csp6I GTAC 1 cut(s) 12
CviJI RGCY 1 cut(s) 179
CviKI_1 RGCY 1 cut(s) 179
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 57, 175
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 75, 135
Eco57I CTGAAG 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 75
FaqI GGGAC 3 cut(s) 19, 49, 61
FauI CCCGC 3 cut(s) 25, 65, 86
Fnu4HI GCNGC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 82
HapII CCGG 3 cut(s) 24, 180, 209
HgaI GACGC 2 cut(s) 113, 165
HinfI GANTC 1 cut(s) 119
HpaII CCGG 3 cut(s) 24, 180, 209
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 5 cut(s) 43, 46, 49, 52, 129
HpyAV CCTTC 2 cut(s) 136, 156
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 57, 175
KflI GGGWCCC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 2 cut(s) 29, 65
LpnPI CCDG 2 cut(s) 37, 193
MalI GATC 1 cut(s) 173
MbiI CCGCTC 1 cut(s) 32
MboI GATC 1 cut(s) 171
MflI RGATCY 1 cut(s) 171
MluCI AATT 1 cut(s) 194
MnlI CCTC 4 cut(s) 92, 104, 146, 161
MseI TTAA 1 cut(s) 222
MspI CCGG 3 cut(s) 24, 180, 209
MspR9I CCNGG 2 cut(s) 181, 210
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 78
NciI CCSGG 2 cut(s) 181, 210
NdeII GATC 1 cut(s) 171
NlaIV GGNNCC 2 cut(s) 76, 77
NspV TTCGAA 1 cut(s) 215
PcsI WCGNNNNNNNCGW 3 cut(s) 44, 47, 121
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 76, 77
PspPI GGNCC 2 cut(s) 75, 135
PspPPI RGGWCCY 1 cut(s) 75
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 2 cut(s) 75, 135
ScrFI CCNGG 2 cut(s) 181, 210
SfuI TTCGAA 1 cut(s) 215
SinI GGWCC 2 cut(s) 75, 135
Sse9I AATT 1 cut(s) 194
SsiI CCGC 5 cut(s) 27, 32, 72, 79, 82
StyD4I CCNGG 2 cut(s) 179, 208
TaqI TCGA 1 cut(s) 215
TaqII GACCGA 1 cut(s) 123
TasI AATT 1 cut(s) 194
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 75, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.