pycom11g11300

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013237
Physical Location & Seq
Forward (+)
9885448 .. 9886068
621 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g11300.1

Sequence Viewer

Length: 621 bp
ATGACCTCTATAAAAGCCAATCGAAACGCCTTCAATTCTCAGAACCAAAATCAACAAACGCAGAAGGAGACCAAGGGCATCGAACCAAAACGCAGCGATTTGATCCTCCCCCAAATGGCGACTAGTGAGAGCTACTACGCTAGGCCGAACTACCGTTACCTCTCCGGCGACCACCACCACCACCAAACCCTAGCGTCCGATTTCGAACTCGACGAGTCGGACATCTACAACTTCGGCCGGTCCAACTCGCCGGAGTACCGCAAACCGATCCCGAGTTCCCGCGGCGTCTCGGCAGCGAAGAACCGGCGGGGAGATTCCGGACACCGCTCGGACATGACCGGCGGCAAGGCGGCGTCGTTGCCGGTCGGCATGCCGGACTGGTCCAAGATCTTGAGAGGTGAGTACCGGGAGAACCGGAGGAGCGATGATGACGAGGCGGACGGCGATGACGACGTGGAGGGAGGCGTGCGGATCCCGCCGCACGAGTTCCTGGCGAGGCAGATGGCGAGAACGAGAATCGCGTCGTTCTCGGTGCACGAAGGCGTCGGGAGGACGTTGAAAGGGAGGGATCTCAGTCGGGTCCGAAATGCAATTTGGGAAAAAACTGGGTTCGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

207

Amino Acids

23.31

Weight (kDa)

7.99

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 31 - 206 2.5e-38 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 327
AccII CGCG 2 cut(s) 282, 521
AccIII TCCGGA 1 cut(s) 317
AclWI GGATC 5 cut(s) 97, 262, 466, 479, 576
AcoI YGGCCR 1 cut(s) 235
AcyI GRCGYC 3 cut(s) 285, 353, 543
AfaI GTAC 2 cut(s) 257, 404
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 2 cut(s) 34, 559
AhlI ACTAGT 1 cut(s) 122
AjiI CACGTC 1 cut(s) 454
AjnI CCWGG 1 cut(s) 489
AjuI GAANNNNNNNTTGG 2 cut(s) 577, 609
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 2 cut(s) 62, 292
Alw44I GTGCAC 1 cut(s) 533
AlwI GGATC 5 cut(s) 97, 262, 466, 479, 576
Ama87I CYCGRG 1 cut(s) 271
Aor13HI TCCGGA 1 cut(s) 317
AoxI GGCC 2 cut(s) 143, 235
ApaLI GTGCAC 1 cut(s) 533
ApeKI GCWGC 2 cut(s) 93, 293
AspS9I GGNCC 3 cut(s) 240, 381, 580
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 1 cut(s) 410
AsuII TTCGAA 1 cut(s) 204
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 3 cut(s) 240, 381, 580
BaeGI GKGCMC 1 cut(s) 537
BamHI GGATCC 1 cut(s) 471
BauI CACGAG 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 105, 305
BccI CCATC 1 cut(s) 496
BceAI ACGGC 1 cut(s) 457
BciT130I CCWGG 1 cut(s) 491
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 62, 292
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 3 cut(s) 123, 141, 191
BglII AGATCT 1 cut(s) 387
BisI GCNGC 6 cut(s) 94, 283, 294, 343, 351, 479
BlsI GCNGC 6 cut(s) 95, 284, 295, 344, 352, 480
Bme1390I CCNGG 2 cut(s) 407, 491
Bme18I GGWCC 3 cut(s) 240, 381, 580
BmeT110I CYCGRG 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 3 cut(s) 240, 381, 580
BmiI GGNNCC 2 cut(s) 473, 581
BmrFI CCNGG 2 cut(s) 407, 491
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 615
Bpu14I TTCGAA 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 407
BsaHI GRCGYC 3 cut(s) 285, 353, 543
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 72, 280
BsaWI WCCGGW 2 cut(s) 317, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 4 cut(s) 237, 303, 338, 361
Bse1I ACTGG 2 cut(s) 383, 610
BseAI TCCGGA 1 cut(s) 317
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 2 cut(s) 72, 280
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 53, 586
BseNI ACTGG 2 cut(s) 383, 610
BseRI GAGGAG 1 cut(s) 433
BseSI GKGCMC 1 cut(s) 537
BseX3I CGGCCG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 105, 305
Bsh1236I CGCG 2 cut(s) 282, 521
Bsh1285I CGRYCG 2 cut(s) 238, 366
BshFI GGCC 2 cut(s) 145, 237
BsiEI CGRYCG 2 cut(s) 238, 366
BsiHKAI GWGCWC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 2 cut(s) 62, 292
BsmBI CGTCTC 1 cut(s) 292
BsnI GGCC 2 cut(s) 145, 237
Bso31I GGTCTC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 271
Bsp119I TTCGAA 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 537
Bsp13I TCCGGA 1 cut(s) 317
Bsp143I GATC 5 cut(s) 102, 267, 387, 471, 568
BspANI GGCC 2 cut(s) 145, 237
BspCNI CTCAG 2 cut(s) 52, 585
BspEI TCCGGA 1 cut(s) 317
BspFNI CGCG 2 cut(s) 282, 521
BspLI GGNNCC 2 cut(s) 473, 581
BspPI GGATC 5 cut(s) 97, 262, 466, 479, 576
BspT104I TTCGAA 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 327
BsrFI RCCGGY 4 cut(s) 237, 303, 338, 361
BsrI ACTGG 2 cut(s) 383, 610
BssAI RCCGGY 4 cut(s) 237, 303, 338, 361
BssECI CCNNGG 2 cut(s) 72, 280
BssMI GATC 5 cut(s) 102, 267, 387, 471, 568
BssNI GRCGYC 3 cut(s) 285, 353, 543
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 3 cut(s) 285, 353, 543
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 371, 467
BstDEI CTNAG 2 cut(s) 39, 572
BstDSI CCRYGG 1 cut(s) 280
BstFNI CGCG 2 cut(s) 282, 521
BstKTI GATC 5 cut(s) 105, 270, 390, 474, 571
BstMAI GTCTC 2 cut(s) 62, 292
BstMBI GATC 5 cut(s) 102, 267, 387, 471, 568
BstMCI CGRYCG 2 cut(s) 238, 366
BstMWI GCNNNNNNNGC 1 cut(s) 475
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 405, 489
BstSLI GKGCMC 1 cut(s) 537
BstUI CGCG 2 cut(s) 282, 521
BstV1I GCAGC 2 cut(s) 105, 305
BstX2I RGATCY 3 cut(s) 387, 471, 568
BstYI RGATCY 3 cut(s) 387, 471, 568
BstZI CGGCCG 1 cut(s) 235
BsuRI GGCC 2 cut(s) 145, 237
BtgI CCRYGG 1 cut(s) 280
BtgZI GCGATG 2 cut(s) 438, 459
BtrI CACGTC 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 371, 467
Cfr10I RCCGGY 4 cut(s) 237, 303, 338, 361
Cfr13I GGNCC 3 cut(s) 240, 381, 580
Cfr42I CCGCGG 1 cut(s) 283
CseI GACGC 5 cut(s) 183, 274, 342, 510, 532
Csp6I GTAC 2 cut(s) 256, 403
CviAII CATG 2 cut(s) 334, 370
CviJI RGCY 4 cut(s) 17, 132, 145, 237
CviKI_1 RGCY 4 cut(s) 17, 132, 145, 237
CviQI GTAC 2 cut(s) 256, 403
DdeI CTNAG 2 cut(s) 39, 572
DpnI GATC 5 cut(s) 104, 269, 389, 473, 570
DpnII GATC 5 cut(s) 102, 267, 387, 471, 568
EaeI YGGCCR 1 cut(s) 235
EagI CGGCCG 1 cut(s) 235
EciI GGCGGA 1 cut(s) 452
EclXI CGGCCG 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 3 cut(s) 240, 381, 580
Eco52I CGGCCG 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 2 cut(s) 337, 373
FaiI YATR 3 cut(s) 11, 335, 371
FatI CATG 2 cut(s) 333, 369
FauI CCCGC 3 cut(s) 287, 300, 483
Fnu4HI GCNGC 6 cut(s) 94, 283, 294, 343, 351, 479
Fsp4HI GCNGC 6 cut(s) 94, 283, 294, 343, 351, 479
FspBI CTAG 3 cut(s) 123, 141, 191
GluI GCNGC 6 cut(s) 94, 283, 294, 343, 351, 479
HaeIII GGCC 2 cut(s) 145, 237
HgaI GACGC 5 cut(s) 183, 274, 342, 510, 532
Hin1I GRCGYC 3 cut(s) 285, 353, 543
Hin1II CATG 2 cut(s) 337, 373
HinfI GANTC 3 cut(s) 215, 314, 516
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 5 cut(s) 42, 199, 220, 331, 584
Hpy188III TCNNGA 4 cut(s) 271, 318, 391, 547
Hpy8I GTNNAC 1 cut(s) 535
Hpy99I CGWCG 5 cut(s) 215, 358, 455, 526, 548
HpyAV CCTTC 3 cut(s) 40, 58, 533
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 453, 554
HpyCH4V TGCA 2 cut(s) 535, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 475
HpyF3I CTNAG 2 cut(s) 39, 572
HpySE526I ACGT 2 cut(s) 453, 554
Hsp92I GRCGYC 3 cut(s) 285, 353, 543
Hsp92II CATG 2 cut(s) 337, 373
Kpn2I TCCGGA 1 cut(s) 317
KspI CCGCGG 1 cut(s) 283
Kzo9I GATC 5 cut(s) 102, 267, 387, 471, 568
LmnI GCTCC 1 cut(s) 420
Lsp1109I GCAGC 2 cut(s) 105, 305
LweI GCATC 1 cut(s) 87
MaeI CTAG 3 cut(s) 123, 141, 191
MaeII ACGT 2 cut(s) 453, 554
MaeIII GTNAC 1 cut(s) 155
MalI GATC 5 cut(s) 104, 269, 389, 473, 570
MbiI CCGCTC 1 cut(s) 327
MboI GATC 5 cut(s) 102, 267, 387, 471, 568
MboII GAAGA 1 cut(s) 310
MflI RGATCY 3 cut(s) 387, 471, 568
MhlI GDGCHC 1 cut(s) 537
MluCI AATT 2 cut(s) 34, 591
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 198, 267
MroI TCCGGA 1 cut(s) 317
MseI TTAA 1 cut(s) 619
MspA1I CMGCKG 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 407, 491
MvaI CCWGG 1 cut(s) 491
MvnI CGCG 2 cut(s) 282, 521
MwoI GCNNNNNNNGC 1 cut(s) 475
NciI CCSGG 1 cut(s) 407
NdeII GATC 5 cut(s) 102, 267, 387, 471, 568
NlaIII CATG 2 cut(s) 337, 373
NlaIV GGNNCC 2 cut(s) 473, 581
NmeAIII GCCGAG 1 cut(s) 269
NspI RCATGY 1 cut(s) 373
NspV TTCGAA 1 cut(s) 204
PaeI GCATGC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 3 cut(s) 210, 447, 518
PfeI GAWTC 2 cut(s) 314, 516
PkrI GCNGC 6 cut(s) 95, 284, 295, 344, 352, 480
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 473, 581
PspPI GGNCC 3 cut(s) 240, 381, 580
PsrI GAACNNNNNNTAC 2 cut(s) 140, 172
PsuI RGATCY 3 cut(s) 387, 471, 568
RsaI GTAC 2 cut(s) 257, 404
RsaNI GTAC 2 cut(s) 256, 403
SacII CCGCGG 1 cut(s) 283
SaqAI TTAA 1 cut(s) 619
SatI GCNGC 6 cut(s) 94, 283, 294, 343, 351, 479
Sau3AI GATC 5 cut(s) 102, 267, 387, 471, 568
Sau96I GGNCC 3 cut(s) 240, 381, 580
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 407, 491
SduI GDGCHC 1 cut(s) 537
SetI ASST 6 cut(s) 8, 134, 162, 400, 456, 557
SfaNI GCATC 1 cut(s) 87
Sfr303I CCGCGG 1 cut(s) 283
SfuI TTCGAA 1 cut(s) 204
SgrBI CCGCGG 1 cut(s) 283
SinI GGWCC 3 cut(s) 240, 381, 580
SmlI CTYRAG 1 cut(s) 391
SmoI CTYRAG 1 cut(s) 391
SpeI ACTAGT 1 cut(s) 122
SphI GCATGC 1 cut(s) 373
Sse9I AATT 2 cut(s) 34, 591
SspMI CTAG 3 cut(s) 123, 141, 191
StyD4I CCNGG 2 cut(s) 405, 489
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 2 cut(s) 456, 557
TaqI TCGA 5 cut(s) 22, 81, 204, 210, 612
TasI AATT 2 cut(s) 34, 591
TauI GCSGC 4 cut(s) 285, 345, 353, 481
TfiI GAWTC 2 cut(s) 314, 516
Tru1I TTAA 1 cut(s) 619
Tru9I TTAA 1 cut(s) 619
TseI GCWGC 2 cut(s) 93, 293
VneI GTGCAC 1 cut(s) 533
VpaK11BI GGWCC 3 cut(s) 240, 381, 580
XceI RCATGY 1 cut(s) 373
XspI CTAG 3 cut(s) 123, 141, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.