Prupe.6G101900_v2.0.a1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013237
Physical Location & Seq
Forward (+)
7084900 .. 7086612
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G101900.1

Sequence Viewer

Length: 507 bp
ATGGCGACGAGTAAGAGCTACTACGCTAGGCCGAACTACCGGTACCTCTCCAGCGACCACCACCACCCAACCCTAGCGCCCGACTCTGCATTCGAACTCGACGAGTCAGACATCTACAACTTCGCCAGGTCCAACTCGCCCGAGTTCCGCAAACCGGTCCCGAGCTCCCGTGTCGTCTCGGCGTCCAAGAACCGGCGATCTGAGGCCGCCGACCGGTCGGACCGTACCGGCGGCACGGCGGCGTCGCTGCCGGTCGGCATTCCGGACTGGTCCAAGATCTTGAGGGACGAGTACCGAGAAAACCGGAAGAGCGATGACGATGACGACGGCGACGATGACGTGGAAGGCGGCGTGCGGGTCCCGCCTCACGAGTTCTTGGCGAGGCAGATGGCGAGAACGAGAATCGCGTCGTTCTCGGTGCACGAAGGCGTGGGGAGGACCTTGAAAGGGAGGGATCTCAGCCGGGTCCGAAATGCAATTTGGGAGAAAACCGGGTTCGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

169

Amino Acids

18.97

Weight (kDa)

6.22

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 42
AccII CGCG 1 cut(s) 407
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 7 cut(s) 148, 207, 231, 239, 348, 355, 362
AclWI GGATC 1 cut(s) 462
AcyI GRCGYC 2 cut(s) 182, 242
AfaI GTAC 3 cut(s) 44, 226, 293
AfiI CCNNNNNNNGG 4 cut(s) 154, 192, 213, 447
AgeI ACCGGT 3 cut(s) 39, 154, 213
AgsI TTSAA 1 cut(s) 445
AjiI CACGTC 1 cut(s) 340
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 2 cut(s) 18, 165
AluI AGCT 2 cut(s) 18, 165
Alw21I GWGCWC 2 cut(s) 167, 423
Alw26I GTCTC 1 cut(s) 181
Alw44I GTGCAC 1 cut(s) 419
AlwI GGATC 1 cut(s) 462
Ama87I CYCGRG 2 cut(s) 140, 160
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 2 cut(s) 29, 204
ApaLI GTGCAC 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 247
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AsiGI ACCGGT 3 cut(s) 39, 154, 213
Asp718I GGTACC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
AsuC2I CCSGG 2 cut(s) 464, 493
AsuII TTCGAA 2 cut(s) 93, 498
AvaI CYCGRG 2 cut(s) 140, 160
AvaII GGWCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
BaeGI GKGCMC 1 cut(s) 423
BanI GGYRCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 167, 423
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 382
BceAI ACGGC 2 cut(s) 252, 343
BciT130I CCWGG 1 cut(s) 127
BcnI CCSGG 2 cut(s) 464, 493
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 27, 74
BfoI RGCGCY 1 cut(s) 80
BglII AGATCT 1 cut(s) 276
BisI GCNGC 5 cut(s) 207, 232, 240, 248, 349
BlsI GCNGC 5 cut(s) 208, 233, 241, 249, 350
Bme1390I CCNGG 3 cut(s) 127, 464, 493
Bme18I GGWCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
BmeT110I CYCGRG 2 cut(s) 140, 160
BmgBI CACGTC 1 cut(s) 340
BmgT120I GGNCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
BmiI GGNNCC 5 cut(s) 44, 159, 359, 360, 467
BmrFI CCNGG 3 cut(s) 127, 464, 493
BpmI CTGGAG 1 cut(s) 34
Bpu14I TTCGAA 2 cut(s) 93, 498
BpuEI CTTGAG 1 cut(s) 301
BpuMI CCSGG 2 cut(s) 464, 493
BsaHI GRCGYC 2 cut(s) 182, 242
BsaWI WCCGGW 5 cut(s) 39, 154, 213, 262, 303
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 192, 213, 447
Bse118I RCCGGY 6 cut(s) 39, 154, 192, 213, 227, 250
Bse1I ACTGG 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 1 cut(s) 127
BseLI CCNNNNNNNGG 4 cut(s) 154, 192, 213, 447
BseMII CTCAG 2 cut(s) 192, 472
BseNI ACTGG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 407
Bsh1285I CGRYCG 3 cut(s) 214, 218, 255
BshFI GGCC 2 cut(s) 31, 206
BshNI GGYRCC 1 cut(s) 42
BshTI ACCGGT 3 cut(s) 39, 154, 213
BsiEI CGRYCG 3 cut(s) 214, 218, 255
BsiHKAI GWGCWC 2 cut(s) 167, 423
BsiHKCI CYCGRG 2 cut(s) 140, 160
BslFI GGGAC 3 cut(s) 143, 299, 344
BslI CCNNNNNNNGG 4 cut(s) 154, 192, 213, 447
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 3 cut(s) 143, 299, 344
BsmI GAATGC 2 cut(s) 89, 258
BsnI GGCC 2 cut(s) 31, 206
BsoBI CYCGRG 2 cut(s) 140, 160
Bsp119I TTCGAA 2 cut(s) 93, 498
Bsp1286I GDGCHC 2 cut(s) 167, 423
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 3 cut(s) 197, 276, 454
BspACI CCGC 7 cut(s) 148, 207, 231, 239, 348, 355, 362
BspANI GGCC 2 cut(s) 31, 206
BspCNI CTCAG 2 cut(s) 193, 471
BspEI TCCGGA 1 cut(s) 262
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 5 cut(s) 44, 159, 359, 360, 467
BspPI GGATC 1 cut(s) 462
BspQI GCTCTTC 1 cut(s) 302
BspT104I TTCGAA 2 cut(s) 93, 498
BspT107I GGYRCC 1 cut(s) 42
BsrFI RCCGGY 6 cut(s) 39, 154, 192, 213, 227, 250
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 6 cut(s) 39, 154, 192, 213, 227, 250
BssMI GATC 3 cut(s) 197, 276, 454
BssNI GRCGYC 2 cut(s) 182, 242
BssSI CACGAG 1 cut(s) 368
Bst2BI CACGAG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 2 cut(s) 182, 242
BstBI TTCGAA 2 cut(s) 93, 498
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 2 cut(s) 201, 458
BstFNI CGCG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 3 cut(s) 200, 279, 457
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 3 cut(s) 197, 276, 454
BstMCI CGRYCG 3 cut(s) 214, 218, 255
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 3 cut(s) 125, 462, 491
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 234
BstX2I RGATCY 2 cut(s) 276, 454
BstYI RGATCY 2 cut(s) 276, 454
BsuRI GGCC 2 cut(s) 31, 206
BtgZI GCGATG 1 cut(s) 327
BtrI CACGTC 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 353
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 6 cut(s) 39, 154, 192, 213, 227, 250
Cfr13I GGNCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
CpoI CGGWCCG 1 cut(s) 220
CseI GACGC 3 cut(s) 171, 231, 396
Csp6I GTAC 3 cut(s) 43, 225, 292
CspAI ACCGGT 3 cut(s) 39, 154, 213
CspI CGGWCCG 1 cut(s) 220
CviJI RGCY 5 cut(s) 18, 31, 165, 206, 462
CviKI_1 RGCY 5 cut(s) 18, 31, 165, 206, 462
CviQI GTAC 3 cut(s) 43, 225, 292
DdeI CTNAG 2 cut(s) 201, 458
DpnI GATC 3 cut(s) 199, 278, 456
DpnII GATC 3 cut(s) 197, 276, 454
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
Eco53kI GAGCTC 1 cut(s) 165
Eco88I CYCGRG 2 cut(s) 140, 160
EcoICRI GAGCTC 1 cut(s) 165
EcoO109I RGGNCCY 2 cut(s) 358, 438
EcoRII CCWGG 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 181
FaqI GGGAC 3 cut(s) 143, 299, 344
FauI CCCGC 2 cut(s) 348, 369
Fnu4HI GCNGC 5 cut(s) 207, 232, 240, 248, 349
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 5 cut(s) 207, 232, 240, 248, 349
FspBI CTAG 2 cut(s) 27, 74
GlaI GCGC 1 cut(s) 78
GluI GCNGC 5 cut(s) 207, 232, 240, 248, 349
GsuI CTGGAG 1 cut(s) 34
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 2 cut(s) 31, 206
HgaI GACGC 3 cut(s) 171, 231, 396
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 2 cut(s) 182, 242
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 3 cut(s) 83, 104, 402
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 4 cut(s) 109, 202, 220, 470
Hpy188III TCNNGA 4 cut(s) 160, 263, 280, 368
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 6 cut(s) 10, 104, 247, 329, 335, 412
HpyAV CCTTC 2 cut(s) 338, 419
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 89, 421, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 2 cut(s) 201, 458
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 2 cut(s) 182, 242
HspAI GCGC 1 cut(s) 77
KflI GGGWCCC 1 cut(s) 358
Kpn2I TCCGGA 1 cut(s) 262
KpnI GGTACC 1 cut(s) 46
Kzo9I GATC 3 cut(s) 197, 276, 454
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 1 cut(s) 234
MaeI CTAG 2 cut(s) 27, 74
MaeII ACGT 1 cut(s) 339
MalI GATC 3 cut(s) 199, 278, 456
MboI GATC 3 cut(s) 197, 276, 454
MboII GAAGA 1 cut(s) 319
MflI RGATCY 2 cut(s) 276, 454
MhlI GDGCHC 2 cut(s) 167, 423
MluCI AATT 1 cut(s) 477
MlyI GAGTC 2 cut(s) 77, 113
MmeI TCCRAC 2 cut(s) 156, 198
MnlI CCTC 7 cut(s) 56, 196, 276, 375, 375, 429, 444
MroI TCCGGA 1 cut(s) 262
MspR9I CCNGG 3 cut(s) 127, 464, 493
Mva1269I GAATGC 2 cut(s) 89, 258
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 361
NciI CCSGG 2 cut(s) 464, 493
NdeII GATC 3 cut(s) 197, 276, 454
NlaIV GGNNCC 5 cut(s) 44, 159, 359, 360, 467
NmeAIII GCCGAG 1 cut(s) 158
NspV TTCGAA 2 cut(s) 93, 498
PciSI GCTCTTC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 330, 404
PctI GAATGC 2 cut(s) 89, 258
PfeI GAWTC 1 cut(s) 402
PinAI ACCGGT 3 cut(s) 39, 154, 213
PkrI GCNGC 5 cut(s) 208, 233, 241, 249, 350
PleI GAGTC 2 cut(s) 77, 112
PpsI GAGTC 2 cut(s) 77, 112
PpuMI RGGWCCY 2 cut(s) 358, 438
Psp124BI GAGCTC 1 cut(s) 167
Psp5II RGGWCCY 2 cut(s) 358, 438
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 5 cut(s) 44, 159, 359, 360, 467
PspPI GGNCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
PspPPI RGGWCCY 2 cut(s) 358, 438
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
PsuI RGATCY 2 cut(s) 276, 454
RsaI GTAC 3 cut(s) 44, 226, 293
RsaNI GTAC 3 cut(s) 43, 225, 292
Rsr2I CGGWCCG 1 cut(s) 220
RsrII CGGWCCG 1 cut(s) 220
SacI GAGCTC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 302
SatI GCNGC 5 cut(s) 207, 232, 240, 248, 349
Sau3AI GATC 3 cut(s) 197, 276, 454
Sau96I GGNCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
SchI GAGTC 2 cut(s) 77, 113
ScrFI CCNGG 3 cut(s) 127, 464, 493
SduI GDGCHC 2 cut(s) 167, 423
SetI ASST 6 cut(s) 20, 48, 131, 167, 342, 443
SfuI TTCGAA 2 cut(s) 93, 498
SinI GGWCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 1 cut(s) 477
SsiI CCGC 7 cut(s) 148, 207, 231, 239, 348, 355, 362
SspMI CTAG 2 cut(s) 27, 74
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 3 cut(s) 125, 462, 491
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 93, 99, 498
TasI AATT 1 cut(s) 477
TauI GCSGC 4 cut(s) 209, 234, 242, 351
TfiI GAWTC 1 cut(s) 402
TseI GCWGC 1 cut(s) 247
VneI GTGCAC 1 cut(s) 419
VpaK11BI GGWCC 7 cut(s) 129, 157, 220, 270, 358, 438, 466
XspI CTAG 2 cut(s) 27, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.