Rh5BG396200

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013237
Physical Location & Seq
Reverse (-)
63978930 .. 63980731
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG396200.1

Sequence Viewer

Length: 522 bp
ATGGCGACTAGTAAAACCTACTACGCTAGGCCGAACTACCGGTACCTCCCGACCGATCACCACCAGCAGACACTGGGCGCCGACTCGGCATTCGAACTCGACGAGTCCGACATCTACAACTTTGCCCGGTCCAGCTCGCCGGAGTACCGGAAGCCGGCGATGAGCTCCCGCGTCGTCTCCTCGGCGGCGTCCAAGAAGTCCGCCTCGTCCAAGCGCTCCGACGCCGGCGACCGGAACGGCGGGACGGCGGCTTCGCTGCCGGTGGGCATTCCGGACTGGTCCAAGATCCTGAGGGACGAGTACCGAGAAAACCGGCGGAGCGGCGACGACGACGACGACTTGGACGACGAGTGCTTCGACGGGAGCGTGCGGGTCCCGCCGCACGAGTTTTTGGCGAGGCAGATGGCGAGGACGAGAATCGCGTCGTTCTCGGTCCACGAAGGCGTGGGGAGGACGCTGAAGGGGAGGGATCTCAGCCGGGTCAGAAATGCAATTTGGGAAAAAACCGGGTTCGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

173

Amino Acids

19.42

Weight (kDa)

6.44

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 19 - 173 2.9e-41 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 2 cut(s) 42, 77
AccBSI CCGCTC 1 cut(s) 321
AccII CGCG 2 cut(s) 171, 422
AccIII TCCGGA 1 cut(s) 271
AclWI GGATC 2 cut(s) 280, 477
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 3 cut(s) 78, 188, 222
AfaI GTAC 3 cut(s) 44, 146, 302
AfeI AGCGCT 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 154, 231
AgeI ACCGGT 1 cut(s) 39
AhlI ACTAGT 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 2 cut(s) 135, 165
AluI AGCT 2 cut(s) 135, 165
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 2 cut(s) 280, 477
AlwNI CAGNNNCTG 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 271
Aor51HI AGCGCT 1 cut(s) 215
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 256
ArsI GACNNNNNNTTYG 6 cut(s) 74, 106, 235, 267, 338, 370
AsiGI ACCGGT 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 80, 216
AspS9I GGNCC 4 cut(s) 129, 279, 373, 433
AsuC2I CCSGG 3 cut(s) 127, 479, 508
AsuHPI GGTGA 1 cut(s) 50
AsuII TTCGAA 2 cut(s) 93, 513
AvaII GGWCC 4 cut(s) 129, 279, 373, 433
AxyI CCTNAGG 1 cut(s) 290
BanI GGYRCC 2 cut(s) 42, 77
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 243
BccI CCATC 1 cut(s) 397
BceAI ACGGC 2 cut(s) 253, 261
BcnI CCSGG 3 cut(s) 127, 479, 508
BcoDI GTCTC 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 27
BfoI RGCGCY 2 cut(s) 81, 217
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 5 cut(s) 186, 249, 257, 322, 380
BlsI GCNGC 5 cut(s) 187, 250, 258, 323, 381
Bme1390I CCNGG 3 cut(s) 127, 479, 508
Bme18I GGWCC 4 cut(s) 129, 279, 373, 433
BmgT120I GGNCC 4 cut(s) 129, 279, 373, 433
BmiI GGNNCC 4 cut(s) 44, 79, 374, 375
BmrFI CCNGG 3 cut(s) 127, 479, 508
BmrI ACTGGG 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 83
Bpu14I TTCGAA 2 cut(s) 93, 513
BpuMI CCSGG 3 cut(s) 127, 479, 508
BsaHI GRCGYC 3 cut(s) 78, 188, 222
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 4 cut(s) 39, 147, 231, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 231
Bse118I RCCGGY 5 cut(s) 39, 154, 224, 259, 312
Bse1I ACTGG 2 cut(s) 78, 281
Bse21I CCTNAGG 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 154, 231
BseMII CTCAG 2 cut(s) 281, 487
BseNI ACTGG 2 cut(s) 78, 281
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 243
Bsh1236I CGCG 2 cut(s) 171, 422
Bsh1285I CGRYCG 2 cut(s) 54, 232
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 2 cut(s) 42, 77
BshTI ACCGGT 1 cut(s) 39
BsiEI CGRYCG 2 cut(s) 54, 232
BsiHKAI GWGCWC 1 cut(s) 167
BslFI GGGAC 3 cut(s) 256, 308, 359
BslI CCNNNNNNNGG 2 cut(s) 154, 231
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 3 cut(s) 256, 308, 359
BsmI GAATGC 2 cut(s) 89, 267
BsnI GGCC 1 cut(s) 31
Bsp119I TTCGAA 2 cut(s) 93, 513
Bsp1286I GDGCHC 1 cut(s) 167
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 3 cut(s) 55, 285, 469
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 282, 486
BspEI TCCGGA 1 cut(s) 271
BspFNI CGCG 2 cut(s) 171, 422
BspLI GGNNCC 4 cut(s) 44, 79, 374, 375
BspPI GGATC 2 cut(s) 280, 477
BspT104I TTCGAA 2 cut(s) 93, 513
BspT107I GGYRCC 2 cut(s) 42, 77
BsrBI CCGCTC 1 cut(s) 321
BsrFI RCCGGY 5 cut(s) 39, 154, 224, 259, 312
BsrI ACTGG 2 cut(s) 78, 281
BssAI RCCGGY 5 cut(s) 39, 154, 224, 259, 312
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 55, 285, 469
BssNI GRCGYC 3 cut(s) 78, 188, 222
BssSI CACGAG 1 cut(s) 383
Bst2BI CACGAG 1 cut(s) 383
BstACI GRCGYC 3 cut(s) 78, 188, 222
BstBI TTCGAA 2 cut(s) 93, 513
BstC8I GCNNGC 4 cut(s) 137, 156, 226, 368
BstDEI CTNAG 2 cut(s) 290, 473
BstFNI CGCG 2 cut(s) 171, 422
BstH2I RGCGCY 2 cut(s) 81, 217
BstHHI GCGC 2 cut(s) 80, 216
BstKTI GATC 3 cut(s) 58, 288, 472
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 3 cut(s) 55, 285, 469
BstMCI CGRYCG 2 cut(s) 54, 232
BstMWI GCNNNNNNNGC 2 cut(s) 86, 376
BstSCI CCNGG 3 cut(s) 125, 477, 506
BstUI CGCG 2 cut(s) 171, 422
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 2 cut(s) 285, 469
BstYI RGATCY 2 cut(s) 285, 469
Bsu36I CCTNAGG 1 cut(s) 290
BsuRI GGCC 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 4 cut(s) 137, 156, 226, 368
CaiI CAGNNNCTG 1 cut(s) 73
CfoI GCGC 2 cut(s) 80, 216
Cfr10I RCCGGY 5 cut(s) 39, 154, 224, 259, 312
Cfr13I GGNCC 4 cut(s) 129, 279, 373, 433
CseI GACGC 5 cut(s) 160, 177, 230, 411, 463
Csp6I GTAC 3 cut(s) 43, 145, 301
CspAI ACCGGT 1 cut(s) 39
CviJI RGCY 6 cut(s) 31, 135, 154, 165, 251, 477
CviKI_1 RGCY 6 cut(s) 31, 135, 154, 165, 251, 477
CviQI GTAC 3 cut(s) 43, 145, 301
DdeI CTNAG 2 cut(s) 290, 473
DinI GGCGCC 1 cut(s) 79
DpnI GATC 3 cut(s) 57, 287, 471
DpnII GATC 3 cut(s) 55, 285, 469
EciI GGCGGA 2 cut(s) 190, 331
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 4 cut(s) 129, 279, 373, 433
Eco47III AGCGCT 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 167
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 181
FaqI GGGAC 3 cut(s) 256, 308, 359
FauI CCCGC 4 cut(s) 176, 233, 363, 384
Fnu4HI GCNGC 5 cut(s) 186, 249, 257, 322, 380
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 5 cut(s) 186, 249, 257, 322, 380
FspBI CTAG 2 cut(s) 9, 27
GlaI GCGC 2 cut(s) 79, 215
GluI GCNGC 5 cut(s) 186, 249, 257, 322, 380
HaeII RGCGCY 2 cut(s) 81, 217
HaeIII GGCC 1 cut(s) 31
HgaI GACGC 5 cut(s) 160, 177, 230, 411, 463
HhaI GCGC 2 cut(s) 80, 216
Hin1I GRCGYC 3 cut(s) 78, 188, 222
Hin6I GCGC 2 cut(s) 78, 214
HinP1I GCGC 2 cut(s) 78, 214
HinfI GANTC 3 cut(s) 83, 104, 417
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 3 cut(s) 109, 220, 485
Hpy188III TCNNGA 3 cut(s) 49, 272, 289
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 2 cut(s) 434, 454
HpyCH4V TGCA 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 376
HpyF3I CTNAG 2 cut(s) 290, 473
Hsp92I GRCGYC 3 cut(s) 78, 188, 222
HspAI GCGC 2 cut(s) 78, 214
KasI GGCGCC 1 cut(s) 77
KflI GGGWCCC 1 cut(s) 373
Kpn2I TCCGGA 1 cut(s) 271
KpnI GGTACC 1 cut(s) 46
KroI GCCGGC 2 cut(s) 154, 224
KroNI GCCGGC 2 cut(s) 156, 226
Kzo9I GATC 3 cut(s) 55, 285, 469
LmnI GCTCC 4 cut(s) 170, 221, 318, 363
Lsp1109I GCAGC 1 cut(s) 243
MaeI CTAG 2 cut(s) 9, 27
MalI GATC 3 cut(s) 57, 287, 471
MbiI CCGCTC 1 cut(s) 321
MboI GATC 3 cut(s) 55, 285, 469
MflI RGATCY 2 cut(s) 285, 469
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 1 cut(s) 492
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 2 cut(s) 77, 113
MmeI TCCRAC 2 cut(s) 132, 243
MnlI CCTC 8 cut(s) 56, 190, 214, 285, 390, 402, 444, 459
MreI CGCCGGCG 1 cut(s) 224
MroI TCCGGA 1 cut(s) 271
MroNI GCCGGC 2 cut(s) 154, 224
MseI TTAA 1 cut(s) 520
MspR9I CCNGG 3 cut(s) 127, 479, 508
Mva1269I GAATGC 2 cut(s) 89, 267
MvnI CGCG 2 cut(s) 171, 422
MwoI GCNNNNNNNGC 2 cut(s) 86, 376
NaeI GCCGGC 2 cut(s) 156, 226
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 3 cut(s) 127, 479, 508
NdeII GATC 3 cut(s) 55, 285, 469
NgoMIV GCCGGC 2 cut(s) 154, 224
NlaIV GGNNCC 4 cut(s) 44, 79, 374, 375
NmeAIII GCCGAG 2 cut(s) 65, 161
NspV TTCGAA 2 cut(s) 93, 513
PcsI WCGNNNNNNNCGW 7 cut(s) 99, 105, 333, 342, 354, 363, 419
PctI GAATGC 2 cut(s) 89, 267
PdiI GCCGGC 2 cut(s) 156, 226
PfeI GAWTC 1 cut(s) 417
PinAI ACCGGT 1 cut(s) 39
PkrI GCNGC 5 cut(s) 187, 250, 258, 323, 381
PleI GAGTC 2 cut(s) 77, 112
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 2 cut(s) 77, 112
PpuMI RGGWCCY 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 373
PspN4I GGNNCC 4 cut(s) 44, 79, 374, 375
PspPI GGNCC 4 cut(s) 129, 279, 373, 433
PspPPI RGGWCCY 1 cut(s) 373
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 2 cut(s) 285, 469
RsaI GTAC 3 cut(s) 44, 146, 302
RsaNI GTAC 3 cut(s) 43, 145, 301
SacI GAGCTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 520
SatI GCNGC 5 cut(s) 186, 249, 257, 322, 380
Sau3AI GATC 3 cut(s) 55, 285, 469
Sau96I GGNCC 4 cut(s) 129, 279, 373, 433
SchI GAGTC 2 cut(s) 77, 113
ScrFI CCNGG 3 cut(s) 127, 479, 508
SduI GDGCHC 1 cut(s) 167
SetI ASST 4 cut(s) 20, 48, 137, 167
SfoI GGCGCC 1 cut(s) 79
SfuI TTCGAA 2 cut(s) 93, 513
SgrAI CRCCGGYG 1 cut(s) 224
SinI GGWCC 4 cut(s) 129, 279, 373, 433
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 1 cut(s) 492
SspDI GGCGCC 1 cut(s) 77
SspMI CTAG 2 cut(s) 9, 27
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 3 cut(s) 125, 477, 506
TaqI TCGA 4 cut(s) 93, 99, 357, 513
TaqII GACCGA 2 cut(s) 68, 421
TasI AATT 1 cut(s) 492
TauI GCSGC 4 cut(s) 188, 251, 324, 382
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 256
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 4 cut(s) 129, 279, 373, 433
XspI CTAG 2 cut(s) 9, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.