Rh5DG412000

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013237
Physical Location & Seq
Reverse (-)
65438161 .. 65439935
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG412000.1

Sequence Viewer

Length: 729 bp
ATGCTGAGGGGTAGTTGCGTAATTCCGCAGGGGGAAGCCTTATCCATTAGGCAAGCGGCGAGCCCGAGCTTTATAAAAGCAGAGGAAAGTTCACAATTCTCATTACGAAGAAACCAAGCCAAGCCAAAACTCATTTTCTACAGAGAAGGAAAAAAAAAACCAAAACCTTCCCCAAAACGCCGCGTTTTGAACCTTTCTAGTTCTTCTCCTCCTTCAATGGCGACTAGTAAAACCTACTACGCTAGGCCGAACTACCGGTACCTCCCGACTGATCACCACCACCAGACACTGGGTGCCGACTCGGCATTCGAACTCGACGAGTCCGACATCTACAACTTCGCCCGGTCCAGCTCGCCGGAGTACCGGAAGCCGGCGATGAGCTCCCGCGTCGTCTCCTCGGCGGCGTCCAAGAATTCCGCATCGTCCAAGCGCTCCGACGCCGGCGACCGGAACGGCGGGACTGCGGCGTCGCTGCCGGTGGGCATTCCGGACTGGTCCAAGATCCTGAGGGACGAGTACCGAGAAAACCGGCGGAGCGGGGACGACGACGACGACGAGTGCTTAGACGGGAGCGTGCGGGTCCCGCCGCACGAGTTTTTGGCGAGGCAGATGGCGAGGACGAGAATCGCGTCGTTCTCGGTCCACGAAGGCGTAGGGAGGACGCTGAAGGGGAGGGATCTCAGCCGGGTCAGAAATGCAATTTGGGAAAAAACCGGGTTCGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

242

Amino Acids

27.01

Weight (kDa)

9.74

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 91 - 242 2.1e-40 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AasI GACNNNNNNGTC 1 cut(s) 466
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 2 cut(s) 258, 293
AccB7I CCANNNNNTGG 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 537
AccII CGCG 3 cut(s) 183, 387, 629
AccIII TCCGGA 1 cut(s) 487
AclWI GGATC 2 cut(s) 496, 684
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 686
AcyI GRCGYC 3 cut(s) 404, 438, 467
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 3 cut(s) 260, 362, 518
AfeI AGCGCT 1 cut(s) 431
AfiI CCNNNNNNNGG 3 cut(s) 289, 370, 447
AgeI ACCGGT 1 cut(s) 255
AgsI TTSAA 2 cut(s) 190, 216
AhlI ACTAGT 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 685, 717
AluBI AGCT 3 cut(s) 69, 351, 381
AluI AGCT 3 cut(s) 69, 351, 381
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 2 cut(s) 496, 684
AlwNI CAGNNNCTG 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 64
Aor13HI TCCGGA 1 cut(s) 487
Aor51HI AGCGCT 1 cut(s) 431
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 472
ApoI RAATTY 1 cut(s) 412
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 255
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 4 cut(s) 345, 495, 580, 640
AsuC2I CCSGG 3 cut(s) 343, 686, 715
AsuHPI GGTGA 1 cut(s) 266
AsuII TTCGAA 2 cut(s) 309, 720
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 4 cut(s) 345, 495, 580, 640
AxyI CCTNAGG 1 cut(s) 506
BanI GGYRCC 2 cut(s) 258, 293
BanII GRGCYC 2 cut(s) 65, 383
BauI CACGAG 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 383
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 459
BccI CCATC 1 cut(s) 604
BceAI ACGGC 1 cut(s) 469
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 3 cut(s) 343, 686, 715
BcoDI GTCTC 1 cut(s) 397
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 198, 225, 243
BfmI CTRYAG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 433
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 6 cut(s) 57, 181, 402, 465, 473, 587
BlsI GCNGC 6 cut(s) 58, 182, 403, 466, 474, 588
Bme1390I CCNGG 3 cut(s) 343, 686, 715
Bme18I GGWCC 4 cut(s) 345, 495, 580, 640
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 4 cut(s) 345, 495, 580, 640
BmiI GGNNCC 4 cut(s) 260, 295, 581, 582
BmrFI CCNGG 3 cut(s) 343, 686, 715
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 299
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 2 cut(s) 309, 720
BpuMI CCSGG 3 cut(s) 343, 686, 715
BsaHI GRCGYC 3 cut(s) 404, 438, 467
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 4 cut(s) 255, 363, 447, 487
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 370, 447
Bse118I RCCGGY 5 cut(s) 255, 370, 440, 475, 528
Bse1I ACTGG 2 cut(s) 294, 497
Bse21I CCTNAGG 1 cut(s) 506
BseAI TCCGGA 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 396
BseLI CCNNNNNNNGG 3 cut(s) 289, 370, 447
BseMII CTCAG 2 cut(s) 497, 694
BseNI ACTGG 2 cut(s) 294, 497
BseRI GAGGAG 2 cut(s) 198, 385
BseXI GCAGC 1 cut(s) 459
Bsh1236I CGCG 3 cut(s) 183, 387, 629
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 2 cut(s) 258, 293
BshTI ACCGGT 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 64
BslFI GGGAC 4 cut(s) 472, 524, 554, 566
BslI CCNNNNNNNGG 3 cut(s) 289, 370, 447
BsmAI GTCTC 1 cut(s) 397
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 4 cut(s) 472, 524, 554, 566
BsmI GAATGC 2 cut(s) 305, 483
BsnI GGCC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 64
Bsp119I TTCGAA 2 cut(s) 309, 720
Bsp1286I GDGCHC 2 cut(s) 65, 383
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 3 cut(s) 271, 501, 676
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 2 cut(s) 498, 693
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 3 cut(s) 183, 387, 629
BspLI GGNNCC 4 cut(s) 260, 295, 581, 582
BspPI GGATC 2 cut(s) 496, 684
BspT104I TTCGAA 2 cut(s) 309, 720
BspT107I GGYRCC 2 cut(s) 258, 293
BsrBI CCGCTC 1 cut(s) 537
BsrFI RCCGGY 5 cut(s) 255, 370, 440, 475, 528
BsrI ACTGG 2 cut(s) 294, 497
BssAI RCCGGY 5 cut(s) 255, 370, 440, 475, 528
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 3 cut(s) 271, 501, 676
BssNI GRCGYC 3 cut(s) 404, 438, 467
BssSI CACGAG 1 cut(s) 590
Bst2BI CACGAG 1 cut(s) 590
BstACI GRCGYC 3 cut(s) 404, 438, 467
BstBI TTCGAA 2 cut(s) 309, 720
BstC8I GCNNGC 6 cut(s) 54, 61, 353, 372, 442, 575
BstDEI CTNAG 4 cut(s) 5, 506, 562, 680
BstFNI CGCG 3 cut(s) 183, 387, 629
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 3 cut(s) 274, 504, 679
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 3 cut(s) 271, 501, 676
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 2 cut(s) 302, 583
BstSCI CCNGG 3 cut(s) 341, 684, 713
BstSFI CTRYAG 1 cut(s) 139
BstUI CGCG 3 cut(s) 183, 387, 629
BstV1I GCAGC 1 cut(s) 459
BstX2I RGATCY 2 cut(s) 501, 676
BstYI RGATCY 2 cut(s) 501, 676
Bsu36I CCTNAGG 1 cut(s) 506
BsuRI GGCC 1 cut(s) 247
BtgZI GCGATG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 6 cut(s) 54, 61, 353, 372, 442, 575
CaiI CAGNNNCTG 1 cut(s) 289
CfoI GCGC 1 cut(s) 432
Cfr10I RCCGGY 5 cut(s) 255, 370, 440, 475, 528
Cfr13I GGNCC 4 cut(s) 345, 495, 580, 640
CseI GACGC 6 cut(s) 376, 393, 446, 456, 618, 670
Csp6I GTAC 3 cut(s) 259, 361, 517
CspAI ACCGGT 1 cut(s) 255
CviQI GTAC 3 cut(s) 259, 361, 517
DdeI CTNAG 4 cut(s) 5, 506, 562, 680
DpnI GATC 3 cut(s) 273, 503, 678
DpnII GATC 3 cut(s) 271, 501, 676
DraIII CACNNNGTG 1 cut(s) 293
DrdI GACNNNNNNGTC 1 cut(s) 466
DseDI GACNNNNNNGTC 1 cut(s) 466
EciI GGCGGA 1 cut(s) 547
Ecl136II GAGCTC 1 cut(s) 381
Eco24I GRGCYC 2 cut(s) 65, 383
Eco47I GGWCC 4 cut(s) 345, 495, 580, 640
Eco47III AGCGCT 1 cut(s) 431
Eco53kI GAGCTC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 686
Eco81I CCTNAGG 1 cut(s) 506
Eco88I CYCGRG 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 580
EcoRI GAATTC 1 cut(s) 412
EcoT38I GRGCYC 2 cut(s) 65, 383
Esp3I CGTCTC 1 cut(s) 397
FaiI YATR 1 cut(s) 74
FaqI GGGAC 4 cut(s) 472, 524, 554, 566
FauI CCCGC 5 cut(s) 392, 449, 530, 570, 591
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 6 cut(s) 57, 181, 402, 465, 473, 587
FriOI GRGCYC 2 cut(s) 65, 383
Fsp4HI GCNGC 6 cut(s) 57, 181, 402, 465, 473, 587
FspBI CTAG 3 cut(s) 198, 225, 243
GlaI GCGC 1 cut(s) 431
GluI GCNGC 6 cut(s) 57, 181, 402, 465, 473, 587
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 1 cut(s) 247
HgaI GACGC 6 cut(s) 376, 393, 446, 456, 618, 670
HhaI GCGC 1 cut(s) 432
Hin1I GRCGYC 3 cut(s) 404, 438, 467
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 3 cut(s) 299, 320, 624
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 2 cut(s) 92, 643
Hpy188I TCNGA 3 cut(s) 325, 436, 692
Hpy188III TCNNGA 3 cut(s) 265, 488, 505
Hpy8I GTNNAC 2 cut(s) 92, 643
Hpy99I CGWCG 9 cut(s) 320, 392, 440, 472, 548, 551, 554, 557, 634
HpyAV CCTTC 5 cut(s) 140, 177, 222, 641, 661
HpyCH4V TGCA 1 cut(s) 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 583
HpyF3I CTNAG 4 cut(s) 5, 506, 562, 680
Hsp92I GRCGYC 3 cut(s) 404, 438, 467
HspAI GCGC 1 cut(s) 430
KflI GGGWCCC 1 cut(s) 580
Kpn2I TCCGGA 1 cut(s) 487
KpnI GGTACC 1 cut(s) 262
KroI GCCGGC 2 cut(s) 370, 440
KroNI GCCGGC 2 cut(s) 372, 442
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 3 cut(s) 271, 501, 676
LmnI GCTCC 4 cut(s) 386, 437, 534, 570
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 1 cut(s) 428
MaeI CTAG 3 cut(s) 198, 225, 243
MalI GATC 3 cut(s) 273, 503, 678
MbiI CCGCTC 1 cut(s) 537
MboI GATC 3 cut(s) 271, 501, 676
MboII GAAGA 2 cut(s) 120, 195
MflI RGATCY 2 cut(s) 501, 676
MhlI GDGCHC 2 cut(s) 65, 383
MluCI AATT 4 cut(s) 21, 95, 412, 699
MlyI GAGTC 2 cut(s) 293, 329
MmeI TCCRAC 2 cut(s) 348, 459
MnlI CCTC 9 cut(s) 76, 219, 272, 406, 501, 597, 609, 651, 666
MreI CGCCGGCG 1 cut(s) 440
MroI TCCGGA 1 cut(s) 487
MroNI GCCGGC 2 cut(s) 370, 440
MseI TTAA 1 cut(s) 727
MspR9I CCNGG 3 cut(s) 343, 686, 715
Mva1269I GAATGC 2 cut(s) 305, 483
MvnI CGCG 3 cut(s) 183, 387, 629
MwoI GCNNNNNNNGC 2 cut(s) 302, 583
NaeI GCCGGC 2 cut(s) 372, 442
NciI CCSGG 3 cut(s) 343, 686, 715
NdeII GATC 3 cut(s) 271, 501, 676
NgoMIV GCCGGC 2 cut(s) 370, 440
NlaIV GGNNCC 4 cut(s) 260, 295, 581, 582
NmeAIII GCCGAG 2 cut(s) 281, 377
NspV TTCGAA 2 cut(s) 309, 720
PcsI WCGNNNNNNNCGW 5 cut(s) 315, 321, 549, 552, 626
PctI GAATGC 2 cut(s) 305, 483
PdiI GCCGGC 2 cut(s) 372, 442
PfeI GAWTC 1 cut(s) 624
PflMI CCANNNNNTGG 1 cut(s) 289
PinAI ACCGGT 1 cut(s) 255
PkrI GCNGC 6 cut(s) 58, 182, 403, 466, 474, 588
PleI GAGTC 2 cut(s) 293, 328
PpsI GAGTC 2 cut(s) 293, 328
PpuMI RGGWCCY 1 cut(s) 580
PsiI TTATAA 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 580
PspN4I GGNNCC 4 cut(s) 260, 295, 581, 582
PspPI GGNCC 4 cut(s) 345, 495, 580, 640
PspPPI RGGWCCY 1 cut(s) 580
PsrI GAACNNNNNNTAC 2 cut(s) 242, 274
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 501, 676
RsaI GTAC 3 cut(s) 260, 362, 518
RsaNI GTAC 3 cut(s) 259, 361, 517
SacI GAGCTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 727
SatI GCNGC 6 cut(s) 57, 181, 402, 465, 473, 587
Sau3AI GATC 3 cut(s) 271, 501, 676
Sau96I GGNCC 4 cut(s) 345, 495, 580, 640
SchI GAGTC 2 cut(s) 293, 329
ScrFI CCNGG 3 cut(s) 343, 686, 715
SduI GDGCHC 2 cut(s) 65, 383
SetI ASST 7 cut(s) 71, 169, 195, 236, 264, 353, 383
SfaNI GCATC 1 cut(s) 428
SfcI CTRYAG 1 cut(s) 139
SfuI TTCGAA 2 cut(s) 309, 720
SgrAI CRCCGGYG 1 cut(s) 440
SinI GGWCC 4 cut(s) 345, 495, 580, 640
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 4 cut(s) 21, 95, 412, 699
SspMI CTAG 3 cut(s) 198, 225, 243
SstI GAGCTC 1 cut(s) 383
StyD4I CCNGG 3 cut(s) 341, 684, 713
TaqI TCGA 3 cut(s) 309, 315, 720
TaqII GACCGA 1 cut(s) 628
TasI AATT 4 cut(s) 21, 95, 412, 699
TauI GCSGC 5 cut(s) 59, 183, 404, 467, 589
TfiI GAWTC 1 cut(s) 624
Tru1I TTAA 1 cut(s) 727
Tru9I TTAA 1 cut(s) 727
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 472
TspRI CASTG 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 289
VpaK11BI GGWCC 4 cut(s) 345, 495, 580, 640
XapI RAATTY 1 cut(s) 412
XspI CTAG 3 cut(s) 198, 225, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.