MD11G1136500.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013237
Physical Location & Seq
Forward (+)
12541602 .. 12542111
510 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1136500.v1.1.491

Sequence Viewer

Length: 510 bp
ATGGCGACTAGTAAGAGCTACTACGCTAGGCCGAACTACCGTTACCTCTCCGGCGACCACCACCACCACCACCAAACCCTAGCGTCCGATTTCGAACTCGACGAGTCGGACATCTACAACTTCGGCCGGTCCAACTCGCCTGAGTACCGCAAACCGATCCCGAGCTCCCGCGGCGTCTCGGCCGCGAAGAACCGGCGGGGAGATTCCGGACACCGCTCGGACATGACCGGCGGCAAGGCGGCGTCGTTGCCAGTCGGCATTCCGGACTGGTCCAAGATCTTGAGAGGTGAGTACCGGGAGAACCGGAGGTGCGACGACGACGAGGCGGACGGCGATAACGACGTGGAGGGAGGCGTGCGGATCCCGCCGCACGAGTTCCTGGCGAGGCAGATGGCGAGAACGAGAATCGCGTCGTTCTCGGTGCACGAAGGCGTCGGGAGGACGTTGAAAGGGAGGGATCTCAGTCGGGTCCGAAATGCAATTTGGGAAAAAACTGGGTTCGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

170

Amino Acids

19.11

Weight (kDa)

7.93

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 25 - 169 1.3e-38 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 3 cut(s) 171, 185, 410
AccIII TCCGGA 2 cut(s) 206, 262
AclWI GGATC 4 cut(s) 151, 355, 368, 465
AcoI YGGCCR 2 cut(s) 124, 180
AcyI GRCGYC 3 cut(s) 174, 242, 432
AfaI GTAC 2 cut(s) 146, 293
AgsI TTSAA 1 cut(s) 448
AhlI ACTAGT 1 cut(s) 8
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 1 cut(s) 378
AjuI GAANNNNNNNTTGG 2 cut(s) 466, 498
AluBI AGCT 2 cut(s) 18, 165
AluI AGCT 2 cut(s) 18, 165
Alw21I GWGCWC 2 cut(s) 167, 426
Alw26I GTCTC 1 cut(s) 181
Alw44I GTGCAC 1 cut(s) 422
AlwI GGATC 4 cut(s) 151, 355, 368, 465
Ama87I CYCGRG 1 cut(s) 160
Aor13HI TCCGGA 2 cut(s) 206, 262
AoxI GGCC 3 cut(s) 29, 124, 180
ApaLI GTGCAC 1 cut(s) 422
AspS9I GGNCC 3 cut(s) 129, 270, 469
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 299
AsuII TTCGAA 2 cut(s) 93, 501
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 3 cut(s) 129, 270, 469
BaeGI GKGCMC 1 cut(s) 426
BamHI GGATCC 1 cut(s) 360
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 371
Bbv12I GWGCWC 2 cut(s) 167, 426
BccI CCATC 1 cut(s) 385
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 380
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 3 cut(s) 9, 27, 80
BglII AGATCT 1 cut(s) 276
BisI GCNGC 5 cut(s) 172, 183, 232, 240, 368
BlsI GCNGC 5 cut(s) 173, 184, 233, 241, 369
Bme1390I CCNGG 2 cut(s) 296, 380
Bme18I GGWCC 3 cut(s) 129, 270, 469
BmeT110I CYCGRG 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 129, 270, 469
BmiI GGNNCC 2 cut(s) 362, 470
BmrFI CCNGG 2 cut(s) 296, 380
BmrI ACTGGG 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 504
Bpu14I TTCGAA 2 cut(s) 93, 501
BpuEI CTTGAG 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 296
BsaHI GRCGYC 3 cut(s) 174, 242, 432
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 3 cut(s) 206, 262, 303
Bse118I RCCGGY 3 cut(s) 126, 192, 227
Bse1I ACTGG 3 cut(s) 251, 272, 499
BseAI TCCGGA 2 cut(s) 206, 262
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 132, 475
BseNI ACTGG 3 cut(s) 251, 272, 499
BseSI GKGCMC 1 cut(s) 426
BseX3I CGGCCG 2 cut(s) 124, 180
Bsh1236I CGCG 3 cut(s) 171, 185, 410
Bsh1285I CGRYCG 2 cut(s) 127, 183
BshFI GGCC 3 cut(s) 31, 126, 182
BsiEI CGRYCG 2 cut(s) 127, 183
BsiHKAI GWGCWC 2 cut(s) 167, 426
BsiHKCI CYCGRG 1 cut(s) 160
BsiSI CCGG 8 cut(s) 51, 127, 193, 207, 228, 263, 295, 304
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 3 cut(s) 31, 126, 182
BsoBI CYCGRG 1 cut(s) 160
Bsp119I TTCGAA 2 cut(s) 93, 501
Bsp1286I GDGCHC 2 cut(s) 167, 426
Bsp13I TCCGGA 2 cut(s) 206, 262
Bsp143I GATC 4 cut(s) 156, 276, 360, 457
BspANI GGCC 3 cut(s) 31, 126, 182
BspCNI CTCAG 2 cut(s) 133, 474
BspEI TCCGGA 2 cut(s) 206, 262
BspFNI CGCG 3 cut(s) 171, 185, 410
BspLI GGNNCC 2 cut(s) 362, 470
BspPI GGATC 4 cut(s) 151, 355, 368, 465
BspT104I TTCGAA 2 cut(s) 93, 501
BsrBI CCGCTC 1 cut(s) 216
BsrFI RCCGGY 3 cut(s) 126, 192, 227
BsrI ACTGG 3 cut(s) 251, 272, 499
BssAI RCCGGY 3 cut(s) 126, 192, 227
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 4 cut(s) 156, 276, 360, 457
BssNI GRCGYC 3 cut(s) 174, 242, 432
BssSI CACGAG 1 cut(s) 371
Bst2BI CACGAG 1 cut(s) 371
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 41
BstACI GRCGYC 3 cut(s) 174, 242, 432
BstBI TTCGAA 2 cut(s) 93, 501
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 2 cut(s) 141, 461
BstDSI CCRYGG 1 cut(s) 169
BstFNI CGCG 3 cut(s) 171, 185, 410
BstKTI GATC 4 cut(s) 159, 279, 363, 460
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 4 cut(s) 156, 276, 360, 457
BstMCI CGRYCG 2 cut(s) 127, 183
BstMWI GCNNNNNNNGC 2 cut(s) 171, 364
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 294, 378
BstSLI GKGCMC 1 cut(s) 426
BstUI CGCG 3 cut(s) 171, 185, 410
BstX2I RGATCY 3 cut(s) 276, 360, 457
BstYI RGATCY 3 cut(s) 276, 360, 457
BstZI CGGCCG 2 cut(s) 124, 180
BsuRI GGCC 3 cut(s) 31, 126, 182
BtgI CCRYGG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 356
Cfr10I RCCGGY 3 cut(s) 126, 192, 227
Cfr13I GGNCC 3 cut(s) 129, 270, 469
Cfr42I CCGCGG 1 cut(s) 172
CseI GACGC 5 cut(s) 72, 163, 231, 399, 421
Csp6I GTAC 2 cut(s) 145, 292
CviAII CATG 1 cut(s) 223
CviJI RGCY 5 cut(s) 18, 31, 126, 165, 182
CviKI_1 RGCY 5 cut(s) 18, 31, 126, 165, 182
CviQI GTAC 2 cut(s) 145, 292
DdeI CTNAG 2 cut(s) 141, 461
DpnI GATC 4 cut(s) 158, 278, 362, 459
DpnII GATC 4 cut(s) 156, 276, 360, 457
EaeI YGGCCR 2 cut(s) 124, 180
EagI CGGCCG 2 cut(s) 124, 180
EciI GGCGGA 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 165
EclXI CGGCCG 2 cut(s) 124, 180
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 3 cut(s) 129, 270, 469
Eco52I CGGCCG 2 cut(s) 124, 180
Eco53kI GAGCTC 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 1 cut(s) 226
FaiI YATR 1 cut(s) 224
FatI CATG 1 cut(s) 222
FauI CCCGC 3 cut(s) 176, 189, 372
Fnu4HI GCNGC 5 cut(s) 172, 183, 232, 240, 368
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 5 cut(s) 172, 183, 232, 240, 368
FspBI CTAG 3 cut(s) 9, 27, 80
GluI GCNGC 5 cut(s) 172, 183, 232, 240, 368
HaeIII GGCC 3 cut(s) 31, 126, 182
HapII CCGG 8 cut(s) 51, 127, 193, 207, 228, 263, 295, 304
HgaI GACGC 5 cut(s) 72, 163, 231, 399, 421
Hin1I GRCGYC 3 cut(s) 174, 242, 432
Hin1II CATG 1 cut(s) 226
HinfI GANTC 3 cut(s) 104, 203, 405
HpaII CCGG 8 cut(s) 51, 127, 193, 207, 228, 263, 295, 304
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 4 cut(s) 88, 109, 220, 473
Hpy188III TCNNGA 5 cut(s) 160, 207, 263, 280, 436
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 8 cut(s) 104, 247, 317, 320, 323, 344, 415, 437
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 2 cut(s) 342, 443
HpyCH4V TGCA 2 cut(s) 424, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 364
HpyF3I CTNAG 2 cut(s) 141, 461
HpySE526I ACGT 2 cut(s) 342, 443
Hsp92I GRCGYC 3 cut(s) 174, 242, 432
Hsp92II CATG 1 cut(s) 226
Kpn2I TCCGGA 2 cut(s) 206, 262
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 4 cut(s) 156, 276, 360, 457
LmnI GCTCC 1 cut(s) 170
MaeI CTAG 3 cut(s) 9, 27, 80
MaeII ACGT 2 cut(s) 342, 443
MaeIII GTNAC 1 cut(s) 41
MalI GATC 4 cut(s) 158, 278, 362, 459
MbiI CCGCTC 1 cut(s) 216
MboI GATC 4 cut(s) 156, 276, 360, 457
MboII GAAGA 1 cut(s) 199
MflI RGATCY 3 cut(s) 276, 360, 457
MhlI GDGCHC 2 cut(s) 167, 426
MluCI AATT 1 cut(s) 480
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 87, 156
MnlI CCTC 9 cut(s) 56, 278, 300, 316, 340, 344, 378, 432, 447
MroI TCCGGA 2 cut(s) 206, 262
MseI TTAA 1 cut(s) 508
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 8 cut(s) 51, 127, 193, 207, 228, 263, 295, 304
MspR9I CCNGG 2 cut(s) 296, 380
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 3 cut(s) 171, 185, 410
MwoI GCNNNNNNNGC 2 cut(s) 171, 364
NciI CCSGG 1 cut(s) 296
NdeII GATC 4 cut(s) 156, 276, 360, 457
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 362, 470
NmeAIII GCCGAG 1 cut(s) 158
NspV TTCGAA 2 cut(s) 93, 501
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 336, 407
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 203, 405
PkrI GCNGC 5 cut(s) 173, 184, 233, 241, 369
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 362, 470
PspPI GGNCC 3 cut(s) 129, 270, 469
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
PsuI RGATCY 3 cut(s) 276, 360, 457
RsaI GTAC 2 cut(s) 146, 293
RsaNI GTAC 2 cut(s) 145, 292
SacI GAGCTC 1 cut(s) 167
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 508
SatI GCNGC 5 cut(s) 172, 183, 232, 240, 368
Sau3AI GATC 4 cut(s) 156, 276, 360, 457
Sau96I GGNCC 3 cut(s) 129, 270, 469
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 296, 380
SduI GDGCHC 2 cut(s) 167, 426
SetI ASST 7 cut(s) 20, 48, 167, 289, 311, 345, 446
Sfr303I CCGCGG 1 cut(s) 172
SfuI TTCGAA 2 cut(s) 93, 501
SgrBI CCGCGG 1 cut(s) 172
SinI GGWCC 3 cut(s) 129, 270, 469
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 1 cut(s) 480
SspMI CTAG 3 cut(s) 9, 27, 80
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 294, 378
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 2 cut(s) 345, 446
TaqI TCGA 3 cut(s) 93, 99, 501
TasI AATT 1 cut(s) 480
TauI GCSGC 5 cut(s) 174, 185, 234, 242, 370
TfiI GAWTC 2 cut(s) 203, 405
Tru1I TTAA 1 cut(s) 508
Tru9I TTAA 1 cut(s) 508
VneI GTGCAC 1 cut(s) 422
VpaK11BI GGWCC 3 cut(s) 129, 270, 469
XspI CTAG 3 cut(s) 9, 27, 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.