FvH4_3g32220

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013237
Physical Location & Seq
Reverse (-)
27502104 .. 27502619
516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32220.t1

Sequence Viewer

Length: 516 bp
ATGGCGACAAGTAAAAGCTACTACGCCAGGCCCAACTACCGGTACCTGCCGACCGATCACCACCACCAGACACTCGGCGGCGACTCGGCATTCGAACTCGACGAGTCCGACATCTACAACTTCGCCCGGTCCAGCTCGCCGGAGTACCGCAAGCCGGCGATGAGCTCCCGCGGGGCGTCGAAGAAGTCGTCGTCGGCCTCGTCCAAGCGCTCCGACGCCGGTGACCTTAGTGGCGGGACGGCGGCGTCGCTGCCGGTGGGGATTCCGGACTGGTCCAAGATTCTGAGGGACGAGTACCGGGAAAACCGGAGGAGTGATGACGACGACGACGTGGACGAAGACGAGTGGTCCGCAGGGAGCGTGCGGGTCCCGCCGCACGAGTTTTTGGCGAGGCAGATGGCGAGGACGAGAATCGCGTCCTTCTCGGTGCACGAAGGCGTGGGGAGGACGCTGAAGGGGAGGGATCTGAGCCGGGTCCGTAATGCGATTTGGGAAAAAACCGGGTTCGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

172

Amino Acids

19.15

Weight (kDa)

6.22

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 20 - 171 6.7e-41 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 54
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 42
AccII CGCG 2 cut(s) 171, 416
AccIII TCCGGA 1 cut(s) 265
AclWI GGATC 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 473
AcyI GRCGYC 3 cut(s) 176, 216, 245
AfaI GTAC 3 cut(s) 44, 146, 296
AfeI AGCGCT 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 39, 154
AgeI ACCGGT 1 cut(s) 39
AhdI GACNNNNNGTC 1 cut(s) 346
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 3 cut(s) 18, 135, 165
AluI AGCT 3 cut(s) 18, 135, 165
Alw21I GWGCWC 2 cut(s) 167, 432
Alw44I GTGCAC 1 cut(s) 428
AlwI GGATC 1 cut(s) 471
Aor13HI TCCGGA 1 cut(s) 265
Aor51HI AGCGCT 1 cut(s) 209
AoxI GGCC 2 cut(s) 29, 195
ApaLI GTGCAC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 250
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 173, 205
AsiGI ACCGGT 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 6 cut(s) 30, 129, 273, 348, 367, 475
AsuC2I CCSGG 4 cut(s) 127, 299, 473, 502
AsuHPI GGTGA 2 cut(s) 50, 233
AsuII TTCGAA 2 cut(s) 93, 507
AvaII GGWCC 5 cut(s) 129, 273, 348, 367, 475
BaeGI GKGCMC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 167, 432
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 391
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 28
BcnI CCSGG 4 cut(s) 127, 299, 473, 502
BfoI RGCGCY 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 4 cut(s) 79, 243, 251, 374
BlsI GCNGC 4 cut(s) 80, 244, 252, 375
Bme1390I CCNGG 5 cut(s) 28, 127, 299, 473, 502
Bme18I GGWCC 5 cut(s) 129, 273, 348, 367, 475
BmeRI GACNNNNNGTC 1 cut(s) 346
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 6 cut(s) 30, 129, 273, 348, 367, 475
BmiI GGNNCC 4 cut(s) 44, 368, 369, 476
BmrFI CCNGG 5 cut(s) 28, 127, 299, 473, 502
BpiI GAAGAC 1 cut(s) 345
Bpu14I TTCGAA 2 cut(s) 93, 507
BpuMI CCSGG 4 cut(s) 127, 299, 473, 502
BsaHI GRCGYC 3 cut(s) 176, 216, 245
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 3 cut(s) 39, 265, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 154
Bse118I RCCGGY 4 cut(s) 39, 154, 218, 253
Bse1I ACTGG 1 cut(s) 275
BseAI TCCGGA 1 cut(s) 265
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 39, 154
BseMII CTCAG 2 cut(s) 275, 458
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 325
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 1 cut(s) 237
Bsh1236I CGCG 2 cut(s) 171, 416
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 31, 197
BshNI GGYRCC 1 cut(s) 42
BshTI ACCGGT 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 167, 432
BslFI GGGAC 3 cut(s) 250, 302, 353
BslI CCNNNNNNNGG 2 cut(s) 39, 154
BsmFI GGGAC 3 cut(s) 250, 302, 353
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 2 cut(s) 31, 197
Bsp119I TTCGAA 2 cut(s) 93, 507
Bsp1286I GDGCHC 2 cut(s) 167, 432
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 2 cut(s) 55, 463
BspANI GGCC 2 cut(s) 31, 197
BspCNI CTCAG 2 cut(s) 276, 459
BspEI TCCGGA 1 cut(s) 265
BspFNI CGCG 2 cut(s) 171, 416
BspLI GGNNCC 4 cut(s) 44, 368, 369, 476
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 471
BspT104I TTCGAA 2 cut(s) 93, 507
BspT107I GGYRCC 1 cut(s) 42
BsrFI RCCGGY 4 cut(s) 39, 154, 218, 253
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 4 cut(s) 39, 154, 218, 253
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 55, 463
BssNI GRCGYC 3 cut(s) 176, 216, 245
BssSI CACGAG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 28
BstACI GRCGYC 3 cut(s) 176, 216, 245
BstBI TTCGAA 2 cut(s) 93, 507
BstC8I GCNNGC 4 cut(s) 137, 152, 156, 362
BstDEI CTNAG 3 cut(s) 227, 284, 467
BstDSI CCRYGG 1 cut(s) 169
BstEII GGTNACC 1 cut(s) 221
BstFNI CGCG 2 cut(s) 171, 416
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 2 cut(s) 58, 466
BstMBI GATC 2 cut(s) 55, 463
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNI CCWGG 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 5 cut(s) 26, 125, 297, 471, 500
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 2 cut(s) 171, 416
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 2 cut(s) 31, 197
BtgI CCRYGG 1 cut(s) 169
BtgZI GCGATG 1 cut(s) 173
BtrI CACGTC 1 cut(s) 331
BveI ACCTGC 1 cut(s) 54
Cac8I GCNNGC 4 cut(s) 137, 152, 156, 362
CfoI GCGC 1 cut(s) 210
Cfr10I RCCGGY 4 cut(s) 39, 154, 218, 253
Cfr13I GGNCC 6 cut(s) 30, 129, 273, 348, 367, 475
Cfr42I CCGCGG 1 cut(s) 172
CseI GACGC 5 cut(s) 165, 224, 234, 405, 457
Csp6I GTAC 3 cut(s) 43, 145, 295
CspAI ACCGGT 1 cut(s) 39
CviJI RGCY 7 cut(s) 18, 31, 135, 154, 165, 197, 471
CviKI_1 RGCY 7 cut(s) 18, 31, 135, 154, 165, 197, 471
CviQI GTAC 3 cut(s) 43, 145, 295
DdeI CTNAG 3 cut(s) 227, 284, 467
DpnI GATC 2 cut(s) 57, 465
DpnII GATC 2 cut(s) 55, 463
DrdI GACNNNNNNGTC 1 cut(s) 244
DriI GACNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 244
Eam1105I GACNNNNNGTC 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 5 cut(s) 129, 273, 348, 367, 475
Eco47III AGCGCT 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 473
Eco91I GGTNACC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 367
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 167
FaqI GGGAC 3 cut(s) 250, 302, 353
FauI CCCGC 5 cut(s) 164, 176, 227, 357, 378
Fnu4HI GCNGC 4 cut(s) 79, 243, 251, 374
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 4 cut(s) 79, 243, 251, 374
GlaI GCGC 1 cut(s) 209
GluI GCNGC 4 cut(s) 79, 243, 251, 374
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 2 cut(s) 31, 197
HgaI GACGC 5 cut(s) 165, 224, 234, 405, 457
HhaI GCGC 1 cut(s) 210
Hin1I GRCGYC 3 cut(s) 176, 216, 245
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 5 cut(s) 83, 104, 262, 280, 411
HphI GGTGA 2 cut(s) 50, 233
Hpy166II GTNNAC 2 cut(s) 334, 430
Hpy188I TCNGA 4 cut(s) 109, 214, 285, 468
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 2 cut(s) 334, 430
Hpy99I CGWCG 9 cut(s) 104, 181, 193, 196, 218, 250, 326, 329, 332
HpyAV CCTTC 3 cut(s) 428, 430, 448
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 3 cut(s) 227, 284, 467
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 3 cut(s) 176, 216, 245
HspAI GCGC 1 cut(s) 208
KflI GGGWCCC 1 cut(s) 367
Kpn2I TCCGGA 1 cut(s) 265
KpnI GGTACC 1 cut(s) 46
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 55, 463
LmnI GCTCC 3 cut(s) 170, 215, 357
Lsp1109I GCAGC 1 cut(s) 237
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 221
MalI GATC 2 cut(s) 57, 465
MboI GATC 2 cut(s) 55, 463
MboII GAAGA 2 cut(s) 193, 350
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 2 cut(s) 167, 432
MlyI GAGTC 2 cut(s) 77, 113
MmeI TCCRAC 2 cut(s) 132, 237
MnlI CCTC 7 cut(s) 208, 279, 303, 384, 396, 438, 453
MroI TCCGGA 1 cut(s) 265
MroNI GCCGGC 1 cut(s) 154
MseI TTAA 1 cut(s) 514
MspA1I CMGCKG 1 cut(s) 171
MspR9I CCNGG 5 cut(s) 28, 127, 299, 473, 502
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 28
MvnI CGCG 2 cut(s) 171, 416
MwoI GCNNNNNNNGC 1 cut(s) 370
NaeI GCCGGC 1 cut(s) 156
NciI CCSGG 4 cut(s) 127, 299, 473, 502
NdeII GATC 2 cut(s) 55, 463
NgoMIV GCCGGC 1 cut(s) 154
NlaIV GGNNCC 4 cut(s) 44, 368, 369, 476
NmeAIII GCCGAG 2 cut(s) 54, 65
NmuCI GTSAC 1 cut(s) 221
NspV TTCGAA 2 cut(s) 93, 507
PcsI WCGNNNNNNNCGW 7 cut(s) 99, 105, 185, 197, 327, 333, 413
PctI GAATGC 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 156
PfeI GAWTC 3 cut(s) 262, 280, 411
PinAI ACCGGT 1 cut(s) 39
PkrI GCNGC 4 cut(s) 80, 244, 252, 375
PleI GAGTC 2 cut(s) 77, 112
PpsI GAGTC 2 cut(s) 77, 112
PpuMI RGGWCCY 1 cut(s) 367
Psp124BI GAGCTC 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 4 cut(s) 44, 368, 369, 476
PspPI GGNCC 6 cut(s) 30, 129, 273, 348, 367, 475
PspPPI RGGWCCY 1 cut(s) 367
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 3 cut(s) 44, 146, 296
RsaNI GTAC 3 cut(s) 43, 145, 295
SacI GAGCTC 1 cut(s) 167
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 514
SatI GCNGC 4 cut(s) 79, 243, 251, 374
Sau3AI GATC 2 cut(s) 55, 463
Sau96I GGNCC 6 cut(s) 30, 129, 273, 348, 367, 475
SchI GAGTC 2 cut(s) 77, 113
ScrFI CCNGG 5 cut(s) 28, 127, 299, 473, 502
SduI GDGCHC 2 cut(s) 167, 432
SetI ASST 6 cut(s) 20, 48, 137, 167, 228, 333
Sfr303I CCGCGG 1 cut(s) 172
SfuI TTCGAA 2 cut(s) 93, 507
SgrAI CRCCGGYG 1 cut(s) 218
SgrBI CCGCGG 1 cut(s) 172
SinI GGWCC 5 cut(s) 129, 273, 348, 367, 475
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 5 cut(s) 26, 125, 297, 471, 500
TaiI ACGT 1 cut(s) 333
TaqI TCGA 4 cut(s) 93, 99, 179, 507
TaqII GACCGA 1 cut(s) 68
TauI GCSGC 3 cut(s) 81, 245, 376
TfiI GAWTC 3 cut(s) 262, 280, 411
Tru1I TTAA 1 cut(s) 514
Tru9I TTAA 1 cut(s) 514
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 467
VneI GTGCAC 1 cut(s) 428
VpaK11BI GGWCC 5 cut(s) 129, 273, 348, 367, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.