Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60830 |
| fragaria_vesca | FvH4_5g13260 FvH4_6g20610 |
| malus_domestica | MD06G1206800.v1.1 |
| prunus_persica | Prupe.5G211200_v2.0.a1 |
| pyrus_communis | pycom06g18460 |
| rosa_chinensis | RchiOBHm_Chr3g0476411 |
| rosa_laevigata | RLG00000005012 RLG00000023769 |
| rosa_multiflora | Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006 |
| rosa_roxburghii | Rroxscaffold_3G00270090 Rroxscaffold_6G00405290 |
| rosa_rugosa | Rorug03G0154300 Rorug06G0461400 |
| rosa_samantha | Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300 |
| rosa_wichuraiana | Rw3G018670 Rw7G005160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 266 |
| AciI | CCGC | 2 cut(s) | 136, 478 |
| AclWI | GGATC | 1 cut(s) | 367 |
| AfaI | GTAC | 1 cut(s) | 544 |
| AgsI | TTSAA | 3 cut(s) | 76, 305, 322 |
| AhlI | ACTAGT | 1 cut(s) | 569 |
| AluBI | AGCT | 2 cut(s) | 289, 394 |
| AluI | AGCT | 2 cut(s) | 289, 394 |
| Alw26I | GTCTC | 3 cut(s) | 156, 235, 412 |
| AlwI | GGATC | 1 cut(s) | 367 |
| ApeKI | GCWGC | 1 cut(s) | 289 |
| AspLEI | GCGC | 1 cut(s) | 267 |
| AsuC2I | CCSGG | 1 cut(s) | 239 |
| BbvI | GCAGC | 1 cut(s) | 276 |
| BccI | CCATC | 4 cut(s) | 27, 41, 375, 514 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 179, 213 |
| BcnI | CCSGG | 1 cut(s) | 239 |
| BcoDI | GTCTC | 3 cut(s) | 156, 235, 412 |
| BcuI | ACTAGT | 1 cut(s) | 569 |
| BfaI | CTAG | 3 cut(s) | 12, 570, 619 |
| BfmI | CTRYAG | 1 cut(s) | 580 |
| BisI | GCNGC | 1 cut(s) | 290 |
| BlsI | GCNGC | 1 cut(s) | 291 |
| BmcAI | AGTACT | 1 cut(s) | 544 |
| Bme1390I | CCNGG | 1 cut(s) | 239 |
| BmrFI | CCNGG | 1 cut(s) | 239 |
| BmsI | GCATC | 2 cut(s) | 147, 544 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 392, 424 |
| BpmI | CTGGAG | 1 cut(s) | 186 |
| BpuMI | CCSGG | 1 cut(s) | 239 |
| BsaAI | YACGTR | 1 cut(s) | 260 |
| BsaI | GGTCTC | 1 cut(s) | 235 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 244, 274 |
| Bse1I | ACTGG | 1 cut(s) | 537 |
| Bse3DI | GCAATG | 1 cut(s) | 487 |
| BseMI | GCAATG | 1 cut(s) | 487 |
| BseMII | CTCAG | 1 cut(s) | 327 |
| BseNI | ACTGG | 1 cut(s) | 537 |
| BseRI | GAGGAG | 1 cut(s) | 513 |
| BseXI | GCAGC | 1 cut(s) | 276 |
| BsiSI | CCGG | 1 cut(s) | 238 |
| BslFI | GGGAC | 3 cut(s) | 38, 501, 513 |
| BsmAI | GTCTC | 3 cut(s) | 156, 235, 412 |
| BsmFI | GGGAC | 3 cut(s) | 38, 501, 513 |
| BsmI | GAATGC | 1 cut(s) | 83 |
| Bso31I | GGTCTC | 1 cut(s) | 235 |
| Bsp143I | GATC | 3 cut(s) | 67, 279, 372 |
| BspACI | CCGC | 2 cut(s) | 136, 478 |
| BspCNI | CTCAG | 1 cut(s) | 328 |
| BspHI | TCATGA | 1 cut(s) | 312 |
| BspPI | GGATC | 1 cut(s) | 367 |
| BspQI | GCTCTTC | 2 cut(s) | 208, 279 |
| BspTNI | GGTCTC | 1 cut(s) | 235 |
| BsrDI | GCAATG | 1 cut(s) | 487 |
| BsrI | ACTGG | 1 cut(s) | 537 |
| BssMI | GATC | 3 cut(s) | 67, 279, 372 |
| Bst4CI | ACNGT | 3 cut(s) | 515, 527, 584 |
| Bst6I | CTCTTC | 3 cut(s) | 208, 279, 415 |
| BstBAI | YACGTR | 1 cut(s) | 260 |
| BstDEI | CTNAG | 3 cut(s) | 157, 336, 494 |
| BstHHI | GCGC | 1 cut(s) | 267 |
| BstKTI | GATC | 3 cut(s) | 70, 282, 375 |
| BstMAI | GTCTC | 3 cut(s) | 156, 235, 412 |
| BstMBI | GATC | 3 cut(s) | 67, 279, 372 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 563 |
| BstSCI | CCNGG | 1 cut(s) | 237 |
| BstSFI | CTRYAG | 1 cut(s) | 580 |
| BstV1I | GCAGC | 1 cut(s) | 276 |
| BstX2I | RGATCY | 1 cut(s) | 372 |
| BstYI | RGATCY | 1 cut(s) | 372 |
| BtgZI | GCGATG | 1 cut(s) | 5 |
| BtsIMutI | CAGTG | 1 cut(s) | 96 |
| CciI | TCATGA | 1 cut(s) | 312 |
| CfoI | GCGC | 1 cut(s) | 267 |
| Csp6I | GTAC | 1 cut(s) | 543 |
| CviAII | CATG | 4 cut(s) | 313, 427, 448, 559 |
| CviJI | RGCY | 2 cut(s) | 289, 394 |
| CviKI_1 | RGCY | 2 cut(s) | 289, 394 |
| CviQI | GTAC | 1 cut(s) | 543 |
| DdeI | CTNAG | 3 cut(s) | 157, 336, 494 |
| DpnI | GATC | 3 cut(s) | 69, 281, 374 |
| DpnII | GATC | 3 cut(s) | 67, 279, 372 |
| Eam1104I | CTCTTC | 3 cut(s) | 208, 279, 415 |
| EarI | CTCTTC | 3 cut(s) | 208, 279, 415 |
| Eco31I | GGTCTC | 1 cut(s) | 235 |
| FaeI | CATG | 4 cut(s) | 316, 430, 451, 562 |
| FaiI | YATR | 9 cut(s) | 186, 263, 314, 428, 449, 548, 560, 564, 610 |
| FaqI | GGGAC | 3 cut(s) | 38, 501, 513 |
| FatI | CATG | 4 cut(s) | 312, 426, 447, 558 |
| FauI | CCCGC | 1 cut(s) | 143 |
| Fnu4HI | GCNGC | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 1 cut(s) | 290 |
| FspBI | CTAG | 3 cut(s) | 12, 570, 619 |
| FspI | TGCGCA | 1 cut(s) | 266 |
| GlaI | GCGC | 1 cut(s) | 266 |
| GluI | GCNGC | 1 cut(s) | 290 |
| GsuI | CTGGAG | 1 cut(s) | 186 |
| HapII | CCGG | 1 cut(s) | 238 |
| HhaI | GCGC | 1 cut(s) | 267 |
| Hin1II | CATG | 4 cut(s) | 316, 430, 451, 562 |
| Hin6I | GCGC | 1 cut(s) | 265 |
| HinP1I | GCGC | 1 cut(s) | 265 |
| HinfI | GANTC | 4 cut(s) | 5, 51, 242, 322 |
| HpaII | CCGG | 1 cut(s) | 238 |
| Hpy188I | TCNGA | 2 cut(s) | 337, 372 |
| Hpy188III | TCNNGA | 3 cut(s) | 44, 203, 313 |
| Hpy99I | CGWCG | 1 cut(s) | 68 |
| HpyAV | CCTTC | 1 cut(s) | 185 |
| HpyCH4III | ACNGT | 3 cut(s) | 515, 527, 584 |
| HpyCH4IV | ACGT | 2 cut(s) | 126, 259 |
| HpyCH4V | TGCA | 6 cut(s) | 118, 170, 248, 292, 458, 602 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 563 |
| HpyF3I | CTNAG | 3 cut(s) | 157, 336, 494 |
| HpySE526I | ACGT | 2 cut(s) | 126, 259 |
| Hsp92II | CATG | 4 cut(s) | 316, 430, 451, 562 |
| HspAI | GCGC | 1 cut(s) | 265 |
| Kzo9I | GATC | 3 cut(s) | 67, 279, 372 |
| LguI | GCTCTTC | 2 cut(s) | 208, 279 |
| LmnI | GCTCC | 1 cut(s) | 205 |
| LpnPI | CCDG | 3 cut(s) | 216, 251, 550 |
| Lsp1109I | GCAGC | 1 cut(s) | 276 |
| LweI | GCATC | 2 cut(s) | 147, 544 |
| MaeI | CTAG | 3 cut(s) | 12, 570, 619 |
| MaeII | ACGT | 2 cut(s) | 126, 259 |
| MaeIII | GTNAC | 2 cut(s) | 255, 572 |
| MalI | GATC | 3 cut(s) | 69, 281, 374 |
| MboI | GATC | 3 cut(s) | 67, 279, 372 |
| MboII | GAAGA | 5 cut(s) | 218, 225, 234, 296, 402 |
| MflI | RGATCY | 1 cut(s) | 372 |
| MluCI | AATT | 2 cut(s) | 487, 589 |
| MlyI | GAGTC | 2 cut(s) | 14, 60 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| MnlI | CCTC | 2 cut(s) | 246, 491 |
| MseI | TTAA | 1 cut(s) | 105 |
| MslI | CAYNNNNRTG | 1 cut(s) | 607 |
| MspA1I | CMGCKG | 1 cut(s) | 394 |
| MspI | CCGG | 1 cut(s) | 238 |
| MspR9I | CCNGG | 1 cut(s) | 239 |
| Mva1269I | GAATGC | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 563 |
| NciI | CCSGG | 1 cut(s) | 239 |
| NdeII | GATC | 3 cut(s) | 67, 279, 372 |
| NlaIII | CATG | 4 cut(s) | 316, 430, 451, 562 |
| NmeAIII | GCCGAG | 1 cut(s) | 59 |
| NmuCI | GTSAC | 2 cut(s) | 255, 572 |
| NsbI | TGCGCA | 1 cut(s) | 266 |
| PagI | TCATGA | 1 cut(s) | 312 |
| PciSI | GCTCTTC | 2 cut(s) | 208, 279 |
| PctI | GAATGC | 1 cut(s) | 83 |
| PfeI | GAWTC | 2 cut(s) | 242, 322 |
| PkrI | GCNGC | 1 cut(s) | 291 |
| PleI | GAGTC | 2 cut(s) | 13, 59 |
| PpsI | GAGTC | 2 cut(s) | 13, 59 |
| Ppu21I | YACGTR | 1 cut(s) | 260 |
| PsuI | RGATCY | 1 cut(s) | 372 |
| PvuII | CAGCTG | 1 cut(s) | 394 |
| RsaI | GTAC | 1 cut(s) | 544 |
| RsaNI | GTAC | 1 cut(s) | 543 |
| RseI | CAYNNNNRTG | 1 cut(s) | 607 |
| SapI | GCTCTTC | 2 cut(s) | 208, 279 |
| SaqAI | TTAA | 1 cut(s) | 105 |
| SatI | GCNGC | 1 cut(s) | 290 |
| Sau3AI | GATC | 3 cut(s) | 67, 279, 372 |
| ScaI | AGTACT | 1 cut(s) | 544 |
| SchI | GAGTC | 2 cut(s) | 14, 60 |
| ScrFI | CCNGG | 1 cut(s) | 239 |
| SetI | ASST | 6 cut(s) | 129, 196, 257, 262, 291, 396 |
| SfaNI | GCATC | 2 cut(s) | 147, 544 |
| SfcI | CTRYAG | 1 cut(s) | 580 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 607 |
| SpeI | ACTAGT | 1 cut(s) | 569 |
| Sse9I | AATT | 2 cut(s) | 487, 589 |
| SsiI | CCGC | 2 cut(s) | 136, 478 |
| SspMI | CTAG | 3 cut(s) | 12, 570, 619 |
| StyD4I | CCNGG | 1 cut(s) | 237 |
| TaaI | ACNGT | 3 cut(s) | 515, 527, 584 |
| TaiI | ACGT | 2 cut(s) | 129, 262 |
| TaqI | TCGA | 3 cut(s) | 36, 131, 282 |
| TasI | AATT | 2 cut(s) | 487, 589 |
| TatI | WGTACW | 1 cut(s) | 542 |
| TfiI | GAWTC | 2 cut(s) | 242, 322 |
| Tru1I | TTAA | 1 cut(s) | 105 |
| Tru9I | TTAA | 1 cut(s) | 105 |
| TscAI | CASTG | 1 cut(s) | 103 |
| TseFI | GTSAC | 2 cut(s) | 255, 572 |
| TseI | GCWGC | 1 cut(s) | 289 |
| Tsp45I | GTSAC | 2 cut(s) | 255, 572 |
| TspDTI | ATGAA | 1 cut(s) | 101 |
| TspRI | CASTG | 1 cut(s) | 103 |
| XspI | CTAG | 3 cut(s) | 12, 570, 619 |
| ZrmI | AGTACT | 1 cut(s) | 544 |