Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007128

Physical Location & Seq

Genomic Coordinates Forward (+)

16770692 .. 16771654

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGCCAAATGAATCAAAGGGACCCCACTACTTAACTAGTCATTCTATCCCAACTCAATCCCATCCAAACCCAGTTCACAATCTGGATTCCATATCACTTTGCTCCACTAGGTTCTTCCCCCTCTCTCACATCCATGATTTCTCACCAAACACCTCTTCTCTTAGCAATGAAACTGCCTTTGATGAAGCAGGGGAGCAAAGCATTAACTATGAAAGGAGGCTCAAGAGAATGATATCCAACAGAGAGTCTGCAAGAAGGTCACGGATGCGCAAGAAGAAGCAGATTGAAGAGCTGCAGTATCAGGTGGATCAGCTCCATGCTACGAATCGCCAGCTCTCGGAGAAGCTCATCCAACTGTTAGAGGGCAACCAGCAGATCCTCCAGGAGAATGCTCAATTGAAAGAGAGAGTTTCTTCCCTCCAAATCCTCCTTGCCGATCTCATAACACCTCTGAGGAATGTGGGAGATGTCATCACCACCACCACCAATGGCAATCGACTTAGAGCCGAAGATTCCAGTACCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

177

Amino Acids

20.1

Weight (kDa)

7.07

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60830
fragaria_vesca	FvH4_5g13260 FvH4_6g20610
malus_domestica	MD06G1206800.v1.1
prunus_persica	Prupe.5G211200_v2.0.a1
pyrus_communis	pycom06g18460
rosa_chinensis	RchiOBHm_Chr3g0476411
rosa_laevigata	RLG00000005012 RLG00000023769
rosa_multiflora	Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270090 Rroxscaffold_6G00405290
rosa_rugosa	Rorug03G0154300 Rorug06G0461400
rosa_samantha	Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300
rosa_wichuraiana	Rw3G018670 Rw7G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	272
AclWI	GGATC	2 cut(s)	318, 373
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	290, 403
AhlI	ACTAGT	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	384
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	4 cut(s)	295, 316, 337, 349
AluI	AGCT	4 cut(s)	295, 316, 337, 349
AlwI	GGATC	2 cut(s)	318, 373
ApeKI	GCWGC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	138, 469
AvaII	GGWCC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	386
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	2 cut(s)	39, 111
BfmI	CTRYAG	1 cut(s)	296
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	3 cut(s)	6, 24, 25
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	74, 519
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	386
BseGI	GGATG	4 cut(s)	64, 132, 273, 351
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	2 cut(s)	74, 519
BseXI	GCAGC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	310, 378, 439
BspCNI	CTCAG	1 cut(s)	447
BspLI	GGNNCC	3 cut(s)	6, 24, 25
BspMAI	CTGCAG	1 cut(s)	300
BspPI	GGATC	2 cut(s)	318, 373
BspQI	GCTCTTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	74, 519
BssMI	GATC	3 cut(s)	310, 378, 439
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	2 cut(s)	163, 285
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	3 cut(s)	164, 455, 503
BstF5I	GGATG	4 cut(s)	64, 132, 273, 351
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	3 cut(s)	313, 381, 442
BstMBI	GATC	3 cut(s)	310, 378, 439
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BtsCI	GGATG	4 cut(s)	64, 132, 273, 351
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	3 cut(s)	137, 320, 528
CviJI	RGCY	7 cut(s)	7, 223, 295, 316, 337, 349, 509
CviKI_1	RGCY	7 cut(s)	7, 223, 295, 316, 337, 349, 509
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	3 cut(s)	164, 455, 503
DpnI	GATC	3 cut(s)	312, 380, 441
DpnII	GATC	3 cut(s)	310, 378, 439
Eam1104I	CTCTTC	2 cut(s)	163, 285
EarI	CTCTTC	2 cut(s)	163, 285
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	237
FaeI	CATG	3 cut(s)	140, 323, 531
FaiI	YATR	6 cut(s)	95, 138, 213, 321, 446, 529
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	3 cut(s)	136, 319, 527
Fnu4HI	GCNGC	1 cut(s)	296
FokI	GGATG	4 cut(s)	51, 119, 280, 338
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	2 cut(s)	39, 111
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	296
GsuI	CTGGAG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	140, 323, 531
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	5 cut(s)	14, 89, 248, 328, 515
HphI	GGTGA	2 cut(s)	138, 469
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	343, 456
Hpy188III	TCNNGA	2 cut(s)	86, 226
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	2 cut(s)	254, 298
HpyF3I	CTNAG	3 cut(s)	164, 455, 503
Hsp92II	CATG	3 cut(s)	140, 323, 531
HspAI	GCGC	1 cut(s)	271
KflI	GGGWCCC	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	310, 378, 439
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	4 cut(s)	4, 110, 196, 321
LpnPI	CCDG	8 cut(s)	71, 87, 177, 290, 347, 371, 386, 398
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	2 cut(s)	39, 111
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	3 cut(s)	312, 380, 441
MboI	GATC	3 cut(s)	310, 378, 439
MboII	GAAGA	6 cut(s)	109, 150, 289, 302, 408, 524
MfeI	CAATTG	1 cut(s)	398
MflI	RGATCY	1 cut(s)	378
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	264, 379
MnlI	CCTC	9 cut(s)	134, 166, 213, 358, 392, 431, 440, 450, 462
MseI	TTAA	2 cut(s)	35, 207
MslI	CAYNNNNRTG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	386
NdeII	GATC	3 cut(s)	310, 378, 439
NlaIII	CATG	3 cut(s)	140, 323, 531
NlaIV	GGNNCC	3 cut(s)	6, 24, 25
NmuCI	GTSAC	1 cut(s)	261
NsbI	TGCGCA	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	285
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	4 cut(s)	14, 89, 328, 515
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	297
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	6, 24, 25
PspPI	GGNCC	1 cut(s)	23
PspPPI	RGGWCCY	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	35, 207
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	3 cut(s)	310, 378, 439
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	9 cut(s)	116, 158, 263, 297, 309, 318, 339, 351, 454
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	1 cut(s)	398
SspMI	CTAG	2 cut(s)	39, 111
StyD4I	CCNGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	499
TasI	AATT	1 cut(s)	398
TfiI	GAWTC	4 cut(s)	14, 89, 328, 515
Tru1I	TTAA	2 cut(s)	35, 207
Tru9I	TTAA	2 cut(s)	35, 207
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	4 cut(s)	27, 186, 201, 228
TspGWI	ACGGA	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	23
XspI	CTAG	2 cut(s)	39, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.