Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007128

Physical Location & Seq

Genomic Coordinates Forward (+)

34157702 .. 34158166

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1206800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGCTAAAAGAATCCATGCCGATCAACCCGACCCGATTCTTCCACATCTCTCATATCCATGTTCCAACCCATGGTTTCTCAGCAAACACCTCATCTCTTGGCAACGAAGCCGCCTTCGGTGAAGCAGGGGAGCGGGACATGAACTACGAAAGAAAGCTCAAGAGAATGATATCCAACAGGGAGTCTGCAAGGAGGTCGCGAATGCGTAAGAAGAAGCAGATTGAAGAGCTGCAGTATCAGGTGGATCAGCTCCATTCTACCAATCGCCAGCTCTCGGAGAAGCTCATCCAACTGTTAGAAGGCAACCAACAGATCCTCCAGGAGAATGCTCAGCTGAAGGAGAGAGTCTCTTCCCTTCAAATCATCCTTGCCGATCTCATTGCACCTCTGAGGATTGAGGGAGATGTCACCGTTAACACAAATGGCAATCAGCTTACAGCCGAAGATTCAAGCACGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

155

Amino Acids

17.58

Weight (kDa)

6.98

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	51 - 99	1e-09	Basic region leucine zipper
bZIP_1	PF00170	52 - 110	1.7e-13	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60830
fragaria_vesca	FvH4_5g13260 FvH4_6g20610
malus_domestica	MD06G1206800.v1.1
prunus_persica	Prupe.5G211200_v2.0.a1
pyrus_communis	pycom06g18460
rosa_chinensis	RchiOBHm_Chr3g0476411
rosa_laevigata	RLG00000005012 RLG00000023769
rosa_multiflora	Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270090 Rroxscaffold_6G00405290
rosa_rugosa	Rorug03G0154300 Rorug06G0461400
rosa_samantha	Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300
rosa_wichuraiana	Rw3G018670 Rw7G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	136
AccII	CGCG	1 cut(s)	202
AciI	CCGC	2 cut(s)	114, 136
AclWI	GGATC	2 cut(s)	255, 310
AcuI	CTGAAG	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	74, 277
AgsI	TTSAA	3 cut(s)	227, 362, 453
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	8 cut(s)	7, 160, 232, 253, 274, 286, 337, 436
AluI	AGCT	8 cut(s)	7, 160, 232, 253, 274, 286, 337, 436
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	2 cut(s)	255, 310
ApeKI	GCWGC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	134, 403
BbvI	GCAGC	1 cut(s)	219
BcgI	CGANNNNNNTGC	4 cut(s)	180, 214, 365, 399
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	355
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	114, 233
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	2 cut(s)	115, 234
Bme1390I	CCNGG	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 277
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	2 cut(s)	288, 366
BseLI	CCNNNNNNNGG	2 cut(s)	74, 277
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	96, 347, 383
BseXI	GCAGC	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	74, 277
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	2 cut(s)	210, 334
Bsp143I	GATC	4 cut(s)	24, 247, 315, 376
Bsp1720I	GCTNAGC	1 cut(s)	333
Bsp19I	CCATGG	1 cut(s)	73
Bsp68I	TCGCGA	1 cut(s)	202
BspACI	CCGC	2 cut(s)	114, 136
BspCNI	CTCAG	3 cut(s)	95, 346, 384
BspFNI	CGCG	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	2 cut(s)	255, 310
BspQI	GCTCTTC	1 cut(s)	222
BsrBI	CCGCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	4 cut(s)	24, 247, 315, 376
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	297, 415
Bst6I	CTCTTC	2 cut(s)	222, 358
BstC8I	GCNNGC	2 cut(s)	272, 458
BstDEI	CTNAG	3 cut(s)	82, 333, 392
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	288, 366
BstFNI	CGCG	1 cut(s)	202
BstKTI	GATC	4 cut(s)	27, 250, 318, 379
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	4 cut(s)	24, 247, 315, 376
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	288, 366
BtuMI	TCGCGA	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	272, 458
CviAII	CATG	5 cut(s)	19, 62, 74, 142, 462
DdeI	CTNAG	3 cut(s)	82, 333, 392
DpnI	GATC	4 cut(s)	26, 249, 317, 378
DpnII	GATC	4 cut(s)	24, 247, 315, 376
Eam1104I	CTCTTC	2 cut(s)	222, 358
EarI	CTCTTC	2 cut(s)	222, 358
Eco130I	CCWWGG	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	321
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	5 cut(s)	22, 65, 77, 145, 465
FaiI	YATR	6 cut(s)	20, 57, 63, 75, 143, 463
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	18, 61, 73, 141, 461
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	114, 233
FokI	GGATG	2 cut(s)	275, 353
Fsp4HI	GCNGC	2 cut(s)	114, 233
GluI	GCNGC	2 cut(s)	114, 233
GsuI	CTGGAG	1 cut(s)	305
Hin1II	CATG	5 cut(s)	22, 65, 77, 145, 465
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	5 cut(s)	14, 39, 185, 348, 449
HpaI	GTTAAC	1 cut(s)	418
HphI	GGTGA	2 cut(s)	134, 403
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	280, 393
Hpy188III	TCNNGA	2 cut(s)	163, 201
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	4 cut(s)	127, 296, 334, 368
HpyCH4III	ACNGT	2 cut(s)	297, 415
HpyCH4V	TGCA	3 cut(s)	191, 235, 386
HpyF3I	CTNAG	3 cut(s)	82, 333, 392
Hsp92II	CATG	5 cut(s)	22, 65, 77, 145, 465
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	24, 247, 315, 376
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	4, 133, 258
LpnPI	CCDG	6 cut(s)	114, 166, 227, 284, 308, 335
Lsp1109I	GCAGC	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	4 cut(s)	26, 249, 317, 378
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	4 cut(s)	24, 247, 315, 376
MboII	GAAGA	5 cut(s)	34, 226, 239, 345, 458
MflI	RGATCY	1 cut(s)	315
MlyI	GAGTC	2 cut(s)	194, 357
MmeI	TCCRAC	3 cut(s)	92, 201, 316
MnlI	CCTC	6 cut(s)	103, 189, 329, 387, 394, 399
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	323
Mva1269I	GAATGC	2 cut(s)	210, 334
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	4 cut(s)	24, 247, 315, 376
NlaIII	CATG	5 cut(s)	22, 65, 77, 145, 465
NmuCI	GTSAC	1 cut(s)	409
NruI	TCGCGA	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	222
PctI	GAATGC	2 cut(s)	210, 334
PfeI	GAWTC	3 cut(s)	14, 39, 449
PflMI	CCANNNNNTGG	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	115, 234
PleI	GAGTC	2 cut(s)	193, 356
PpsI	GAGTC	2 cut(s)	193, 356
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	337
RruI	TCGCGA	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	114, 233
Sau3AI	GATC	4 cut(s)	24, 247, 315, 376
SchI	GAGTC	2 cut(s)	194, 357
ScrFI	CCNGG	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SsiI	CCGC	2 cut(s)	114, 136
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	297, 415
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	3 cut(s)	14, 39, 449
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.