Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007128

Physical Location & Seq

Genomic Coordinates Reverse (-)

7496723 .. 7497115

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCTCATTTCAATGACATATCACCATACACCTACACTGTTAGCACTAACACTGTTTTTGATGAAACTGCTGCAGCGGAACAAAGCCTTAACCATGAGAGAAGGCTGAAGAGACTGATTTCCAACAGGGAATCTGCACGAAGGTCGCGAATGCGTAAGAAGAAGCAGATTCAAGAGCTCAAGCATGAAGTGGACCAGCTCTACGTTGCAAATAACCAGCTATATGAGAAGCTGATCCGACTATTAGAGGTTAACCAGCGGATTCTTCAGGAAAATGCTGAGCTAAAAGAGAGAGTTTCTTCCCTTCAAGTCACCTTTACTGATCTGATAGATGTAACCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

115

Amino Acids

13.51

Weight (kDa)

9.0

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	33 - 81	9.7e-10	Basic region leucine zipper
bZIP_1	PF00170	34 - 92	5.1e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60830
fragaria_vesca	FvH4_5g13260 FvH4_6g20610
malus_domestica	MD06G1206800.v1.1
prunus_persica	Prupe.5G211200_v2.0.a1
pyrus_communis	pycom06g18460
rosa_chinensis	RchiOBHm_Chr3g0476411
rosa_laevigata	RLG00000005012 RLG00000023769
rosa_multiflora	Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270090 Rroxscaffold_6G00405290
rosa_rugosa	Rorug03G0154300 Rorug06G0461400
rosa_samantha	Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300
rosa_wichuraiana	Rw3G018670 Rw7G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	148
AciI	CCGC	2 cut(s)	77, 259
AclWI	GGATC	1 cut(s)	229
AcuI	CTGAAG	2 cut(s)	128, 251
AgsI	TTSAA	3 cut(s)	13, 173, 308
AluBI	AGCT	5 cut(s)	178, 199, 220, 232, 283
AluI	AGCT	5 cut(s)	178, 199, 220, 232, 283
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	9, 106
AlwI	GGATC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	71, 74
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	15, 304
AvaII	GGWCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	58, 86
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BcoDI	GTCTC	2 cut(s)	9, 106
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	2 cut(s)	72, 75
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	2 cut(s)	73, 76
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	58, 86
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	9, 106
BsmI	GAATGC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	234, 322
Bsp1720I	GCTNAGC	1 cut(s)	279
Bsp68I	TCGCGA	1 cut(s)	148
BspACI	CCGC	2 cut(s)	77, 259
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	229
BssMI	GATC	2 cut(s)	234, 322
Bst4CI	ACNGT	2 cut(s)	40, 55
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	148
BstKTI	GATC	2 cut(s)	237, 325
BstMAI	GTCTC	2 cut(s)	9, 106
BstMBI	GATC	2 cut(s)	234, 322
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	58, 86
BtsIMutI	CAGTG	2 cut(s)	36, 51
BtuMI	TCGCGA	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	193
CviAII	CATG	2 cut(s)	95, 185
CviJI	RGCY	7 cut(s)	87, 106, 178, 199, 220, 232, 283
CviKI_1	RGCY	7 cut(s)	87, 106, 178, 199, 220, 232, 283
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	236, 324
DpnII	GATC	2 cut(s)	234, 322
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	128, 251
EcoICRI	GAGCTC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	2 cut(s)	98, 188
FaiI	YATR	6 cut(s)	20, 28, 96, 186, 223, 225
FatI	CATG	2 cut(s)	94, 184
Fnu4HI	GCNGC	2 cut(s)	72, 75
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	72, 75
GluI	GCNGC	2 cut(s)	72, 75
Hin1II	CATG	2 cut(s)	98, 188
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	3 cut(s)	131, 169, 262
HpaI	GTTAAC	1 cut(s)	253
HphI	GGTGA	2 cut(s)	15, 304
Hpy166II	GTNNAC	2 cut(s)	193, 253
Hpy188I	TCNGA	2 cut(s)	239, 327
Hpy188III	TCNNGA	3 cut(s)	147, 173, 269
Hpy8I	GTNNAC	2 cut(s)	193, 253
HpyAV	CCTTC	3 cut(s)	96, 135, 314
HpyCH4III	ACNGT	2 cut(s)	40, 55
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	74, 137, 209
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	98, 188
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	234, 322
LpnPI	CCDG	5 cut(s)	112, 209, 230, 254, 269
Lsp1109I	GCAGC	2 cut(s)	58, 86
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	310, 334
MalI	GATC	2 cut(s)	236, 324
MboI	GATC	2 cut(s)	234, 322
MboII	GAAGA	4 cut(s)	121, 172, 257, 291
MhlI	GDGCHC	1 cut(s)	180
MmeI	TCCRAC	2 cut(s)	147, 262
MnlI	CCTC	1 cut(s)	241
MseI	TTAA	3 cut(s)	90, 252, 343
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	2 cut(s)	77, 259
Mva1269I	GAATGC	1 cut(s)	156
MvnI	CGCG	1 cut(s)	148
NdeII	GATC	2 cut(s)	234, 322
NlaIII	CATG	2 cut(s)	98, 188
NmuCI	GTSAC	1 cut(s)	310
NruI	TCGCGA	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PctI	GAATGC	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	131, 169, 262
PkrI	GCNGC	2 cut(s)	73, 76
Psp124BI	GAGCTC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	76
RruI	TCGCGA	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	90, 252, 343
SatI	GCNGC	2 cut(s)	72, 75
Sau3AI	GATC	2 cut(s)	234, 322
Sau96I	GGNCC	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SsiI	CCGC	2 cut(s)	77, 259
SstI	GAGCTC	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	40, 55
TaiI	ACGT	1 cut(s)	207
TfiI	GAWTC	3 cut(s)	131, 169, 262
Tru1I	TTAA	3 cut(s)	90, 252, 343
Tru9I	TTAA	3 cut(s)	90, 252, 343
TscAI	CASTG	2 cut(s)	43, 58
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	71, 74
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	78, 201
TspRI	CASTG	2 cut(s)	43, 58
VpaK11BI	GGWCC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.