Rorug03G0154300
BZIP Family

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000297
Physical Location & Seq
Forward (+)
12682283 .. 12684976
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0154300.1

Sequence Viewer

Length: 756 bp
ATGGCGAAGTGCTATCCAACTGTGAGCGAGGAGTACCAGAAAGCGGTTGAGAAATGCAAGAGAAAGCTGAGAGGACTGATCCAAGAGAAGCACTGCGCTCCTATAATTCTCCGAGTGGCGTGGCACTCGGCTGGGACGTTCGATGTGGCAACGAAGACCGGAGGGCCGTTCGGGACGATCAGGGACCCGGCGGAACTGACTCATGAAGCAAACAAGGGACTCGAGATTGCAGTCAGGATTTTGGAGCCGATCAAGGAGCAGTTTCCGATTCTCTCATACGCAGACTTCTACCAGTTGGCTGGAGTAGTAGCTGTAGAAGTAACAGGAGGGCCAGAGATTCCTTTCCACCCTGGTAGACCGGACAAAGAAGCACCACCACCGGAAGGTCGCTTGCCTGATGCCAAGAAAGGTGTGGATCATCTGAGGGATGTATTTGGTGGCCATATGGGTCTCAGTGATAAGGACATTGTTGCACTATCTGGTGGACACACCTTGGGTAGGTGCCACATGGAGCGCTCTGGATTTGAGGGACCCTGGACAACCAATCCCCTCATTTTTGACAACTCCTATTTCAAGGAACTTATTAGTGGAGAGAAGGAAGGTCTGATCCAGCTCCCATCAGATAAGGCTCTTCTTGAGGATCCAGTTTTTCGTACTTTTGTCGAGACCTATGCTGCGGATGAGGATGCTTTCTTTGCTGACTATGCTGAAGCCCATTTGAAGCTCTCAGAGCTTGGATTTGCAGATACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

251

Amino Acids

27.68

Weight (kDa)

5.25

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 24 - 227 1.8e-43 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 501
AccI GTMKAC 1 cut(s) 355
AciI CCGC 3 cut(s) 44, 191, 677
AclWI GGATC 5 cut(s) 73, 423, 601, 635, 648
AcoI YGGCCR 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 2 cut(s) 35, 655
AfeI AGCGCT 1 cut(s) 515
AfiI CCNNNNNNNGG 3 cut(s) 43, 383, 498
AgsI TTSAA 2 cut(s) 574, 721
AjnI CCWGG 2 cut(s) 349, 533
AluBI AGCT 5 cut(s) 67, 311, 613, 724, 733
AluI AGCT 5 cut(s) 67, 311, 613, 724, 733
Alw26I GTCTC 2 cut(s) 455, 659
AlwI GGATC 5 cut(s) 73, 423, 601, 635, 648
AlwNI CAGNNNCTG 1 cut(s) 749
Ama87I CYCGRG 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 515
AoxI GGCC 3 cut(s) 164, 329, 439
ApeKI GCWGC 1 cut(s) 674
AspLEI GCGC 2 cut(s) 98, 516
AspS9I GGNCC 4 cut(s) 164, 184, 329, 530
AsuC2I CCSGG 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 184, 530
BalI TGGCCA 1 cut(s) 441
BamHI GGATCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 661
BccI CCATC 1 cut(s) 625
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 2 cut(s) 351, 535
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 455, 659
BfmI CTRYAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 517
BisI GCNGC 1 cut(s) 675
BlsI GCNGC 1 cut(s) 676
Bme1390I CCNGG 3 cut(s) 188, 351, 535
Bme18I GGWCC 2 cut(s) 184, 530
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 4 cut(s) 164, 184, 329, 530
BmiI GGNNCC 7 cut(s) 185, 186, 246, 503, 531, 532, 642
BmrFI CCNGG 3 cut(s) 188, 351, 535
BmsI GCATC 2 cut(s) 388, 676
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 1 cut(s) 188
BsaI GGTCTC 2 cut(s) 455, 659
BsaJI CCNNGG 3 cut(s) 349, 492, 533
BsaWI WCCGGW 3 cut(s) 158, 358, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 383, 498
Bse1I ACTGG 2 cut(s) 292, 644
BseBI CCWGG 2 cut(s) 351, 535
BseDI CCNNGG 3 cut(s) 349, 492, 533
BseGI GGATG 3 cut(s) 433, 685, 691
BseLI CCNNNNNNNGG 3 cut(s) 43, 383, 498
BseMII CTCAG 5 cut(s) 59, 413, 466, 741, 741
BseNI ACTGG 2 cut(s) 292, 644
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 661
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 3 cut(s) 166, 331, 441
BshNI GGYRCC 1 cut(s) 501
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 4 cut(s) 159, 188, 359, 380
BslFI GGGAC 5 cut(s) 148, 187, 197, 231, 543
BslI CCNNNNNNNGG 3 cut(s) 43, 383, 498
BsmAI GTCTC 2 cut(s) 455, 659
BsmFI GGGAC 5 cut(s) 148, 187, 197, 231, 543
BsnI GGCC 3 cut(s) 166, 331, 441
Bso31I GGTCTC 2 cut(s) 455, 659
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 6 cut(s) 78, 177, 249, 415, 606, 640
BspACI CCGC 3 cut(s) 44, 191, 677
BspANI GGCC 3 cut(s) 166, 331, 441
BspCNI CTCAG 5 cut(s) 60, 414, 465, 740, 742
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 7 cut(s) 185, 186, 246, 503, 531, 532, 642
BspPI GGATC 5 cut(s) 73, 423, 601, 635, 648
BspQI GCTCTTC 1 cut(s) 636
BspT107I GGYRCC 1 cut(s) 501
BspTNI GGTCTC 2 cut(s) 455, 659
BsrI ACTGG 2 cut(s) 292, 644
BssECI CCNNGG 3 cut(s) 349, 492, 533
BssMI GATC 6 cut(s) 78, 177, 249, 415, 606, 640
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 2 cut(s) 351, 535
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 636
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 5 cut(s) 68, 422, 452, 727, 750
BstENI CCTNNNNNAGG 1 cut(s) 496
BstF5I GGATG 3 cut(s) 433, 685, 691
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 2 cut(s) 98, 516
BstKTI GATC 6 cut(s) 81, 180, 252, 418, 609, 643
BstMAI GTCTC 2 cut(s) 455, 659
BstMBI GATC 6 cut(s) 78, 177, 249, 415, 606, 640
BstMWI GCNNNNNNNGC 3 cut(s) 695, 704, 730
BstNI CCWGG 2 cut(s) 351, 535
BstSCI CCNGG 3 cut(s) 186, 349, 533
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 661
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 640
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 3 cut(s) 166, 331, 441
BtsCI GGATG 3 cut(s) 433, 685, 691
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 91, 460
Cac8I GCNNGC 1 cut(s) 392
CaiI CAGNNNCTG 1 cut(s) 749
CciI TCATGA 1 cut(s) 202
CfoI GCGC 2 cut(s) 98, 516
Cfr13I GGNCC 4 cut(s) 164, 184, 329, 530
Csp6I GTAC 2 cut(s) 34, 654
CviAII CATG 2 cut(s) 203, 508
CviQI GTAC 2 cut(s) 34, 654
DdeI CTNAG 5 cut(s) 68, 422, 452, 727, 750
DpnI GATC 6 cut(s) 80, 179, 251, 417, 608, 642
DpnII GATC 6 cut(s) 78, 177, 249, 415, 606, 640
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 492
Eco31I GGTCTC 2 cut(s) 455, 659
Eco47I GGWCC 2 cut(s) 184, 530
Eco47III AGCGCT 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 729
Eco88I CYCGRG 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 496
EcoO109I RGGNCCY 2 cut(s) 184, 530
EcoRII CCWGG 2 cut(s) 349, 533
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 2 cut(s) 206, 511
FaiI YATR 8 cut(s) 104, 204, 277, 444, 446, 509, 672, 705
FaqI GGGAC 5 cut(s) 148, 187, 197, 231, 543
FatI CATG 2 cut(s) 202, 507
FauNDI CATATG 1 cut(s) 444
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 675
FokI GGATG 3 cut(s) 440, 692, 698
Fsp4HI GCNGC 1 cut(s) 675
GlaI GCGC 2 cut(s) 97, 515
GluI GCNGC 1 cut(s) 675
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 3 cut(s) 166, 331, 441
HapII CCGG 4 cut(s) 159, 188, 359, 380
HhaI GCGC 2 cut(s) 98, 516
Hin1II CATG 2 cut(s) 206, 511
Hin6I GCGC 2 cut(s) 96, 514
HinP1I GCGC 2 cut(s) 96, 514
HinfI GANTC 4 cut(s) 199, 219, 268, 337
HpaII CCGG 4 cut(s) 159, 188, 359, 380
Hpy166II GTNNAC 2 cut(s) 356, 485
Hpy188I TCNGA 6 cut(s) 113, 267, 423, 606, 622, 730
Hpy188III TCNNGA 7 cut(s) 172, 203, 223, 235, 519, 635, 664
Hpy8I GTNNAC 2 cut(s) 356, 485
HpyAV CCTTC 3 cut(s) 377, 589, 593
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 4 cut(s) 57, 230, 473, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 695, 704, 730
HpyF3I CTNAG 5 cut(s) 68, 422, 452, 727, 750
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 2 cut(s) 206, 511
HspAI GCGC 2 cut(s) 96, 514
KflI GGGWCCC 2 cut(s) 184, 530
Kzo9I GATC 6 cut(s) 78, 177, 249, 415, 606, 640
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 5 cut(s) 103, 244, 256, 511, 618
Lsp1109I GCAGC 1 cut(s) 661
LweI GCATC 2 cut(s) 388, 676
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 319
MalI GATC 6 cut(s) 80, 179, 251, 417, 608, 642
MboI GATC 6 cut(s) 78, 177, 249, 415, 606, 640
MboII GAAGA 2 cut(s) 166, 623
MflI RGATCY 1 cut(s) 640
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 1 cut(s) 105
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 2 cut(s) 193, 213
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 9 cut(s) 22, 65, 155, 320, 417, 520, 560, 631, 676
Mox20I TGGCCA 1 cut(s) 441
MscI TGGCCA 1 cut(s) 441
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 4 cut(s) 159, 188, 359, 380
MspR9I CCNGG 3 cut(s) 188, 351, 535
MvaI CCWGG 2 cut(s) 351, 535
MwoI GCNNNNNNNGC 3 cut(s) 695, 704, 730
NciI CCSGG 1 cut(s) 188
NdeI CATATG 1 cut(s) 444
NdeII GATC 6 cut(s) 78, 177, 249, 415, 606, 640
NlaIII CATG 2 cut(s) 206, 511
NlaIV GGNNCC 7 cut(s) 185, 186, 246, 503, 531, 532, 642
NmeAIII GCCGAG 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 221
PagI TCATGA 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PfeI GAWTC 2 cut(s) 268, 337
PkrI GCNGC 1 cut(s) 676
PleI GAGTC 2 cut(s) 193, 213
PpsI GAGTC 2 cut(s) 193, 213
PpuMI RGGWCCY 2 cut(s) 184, 530
Psp5II RGGWCCY 2 cut(s) 184, 530
Psp6I CCWGG 2 cut(s) 349, 533
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 349, 533
PspN4I GGNNCC 7 cut(s) 185, 186, 246, 503, 531, 532, 642
PspPI GGNCC 4 cut(s) 164, 184, 329, 530
PspPPI RGGWCCY 2 cut(s) 184, 530
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 2 cut(s) 35, 655
RsaNI GTAC 2 cut(s) 34, 654
SapI GCTCTTC 1 cut(s) 636
SatI GCNGC 1 cut(s) 675
Sau3AI GATC 6 cut(s) 78, 177, 249, 415, 606, 640
Sau96I GGNCC 4 cut(s) 164, 184, 329, 530
SchI GAGTC 2 cut(s) 193, 213
ScrFI CCNGG 3 cut(s) 188, 351, 535
SfaNI GCATC 2 cut(s) 388, 676
SfcI CTRYAG 1 cut(s) 312
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 2 cut(s) 184, 530
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 221, 635
SmoI CTYRAG 2 cut(s) 221, 635
Sse9I AATT 1 cut(s) 105
SsiI CCGC 3 cut(s) 44, 191, 677
StyD4I CCNGG 3 cut(s) 186, 349, 533
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 140
TaqI TCGA 3 cut(s) 141, 222, 663
TasI AATT 1 cut(s) 105
TfiI GAWTC 2 cut(s) 268, 337
TscAI CASTG 2 cut(s) 98, 460
TseI GCWGC 1 cut(s) 674
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 2 cut(s) 98, 460
VpaK11BI GGWCC 2 cut(s) 184, 530
XagI CCTNNNNNAGG 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XhoI CTCGAG 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.