Rh2AG481600

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000297
Physical Location & Seq
Forward (+)
70196970 .. 70199975
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG481600.1

Sequence Viewer

Length: 507 bp
ATGGATGATGAATTTTTTAGAGAGAACGGGAAGGGAATAGCAGCTCCATCTTTGGTTGATCTGTGCGTTCATGTGGCGATAGATAATATAAGGTACCTTGGGGATGTTGGCGAAACAGATTTTGATTTTCTTGAGCAAATCTTGCCACATTGTACAAAAGACCAGTTGATGCATATCGAGAAGAGTACGAAAGGTAGGGATTTGAGTCCAGTAACTGATAAGTTGTGGAAGAAATTCTATGAGAAGGATTTTGGTATTGACAGGACTAATGTGGTGATTGAAAGGATGAGGAAAAAGAAAGTCAATTTCAGATGGTTGCAATTGTATCAGGCCAAATTGAGGGAAGTGGATGAGGCTGAAAATGAAGCGGCTGACCGGTTGAAGAATTCATATAAAAAAGAAGATGCACGGAAACAAAGTCGCCAAGTTCGTATCTGTGAAAAGGTTCCACCGTCAAGCAATAAAAGAGGTTGGGGTGGAGGAGGTAGGTTTTCTGACCTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

168

Amino Acids

19.6

Weight (kDa)

8.69

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 34 - 142 6.6e-26 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 93
AciI CCGC 1 cut(s) 368
AcsI RAATTY 3 cut(s) 11, 233, 385
AfaI GTAC 3 cut(s) 95, 154, 187
AfiI CCNNNNNNNGG 1 cut(s) 339
AgeI ACCGGT 1 cut(s) 375
AgsI TTSAA 2 cut(s) 281, 382
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 3 cut(s) 11, 233, 385
AsiGI ACCGGT 1 cut(s) 375
Asp700I GAANNNNTTC 2 cut(s) 233, 444
Asp718I GGTACC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 286
BanI GGYRCC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 55, 306
BfaI CTAG 1 cut(s) 505
BisI GCNGC 2 cut(s) 42, 369
BlsI GCNGC 2 cut(s) 43, 370
BmiI GGNNCC 2 cut(s) 95, 447
BmsI GCATC 2 cut(s) 159, 394
BpuEI CTTGAG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse118I RCCGGY 1 cut(s) 375
Bse1I ACTGG 2 cut(s) 163, 209
Bse8I GATNNNNATC 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 4 cut(s) 10, 109, 291, 355
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 163, 209
BseRI GAGGAG 1 cut(s) 495
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 93
BshTI ACCGGT 1 cut(s) 375
BsiSI CCGG 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 339
BsnI GGCC 1 cut(s) 332
Bsp1407I TGTACA 1 cut(s) 152
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 1 cut(s) 368
BspANI GGCC 1 cut(s) 332
BspLI GGNNCC 2 cut(s) 95, 447
BspT107I GGYRCC 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 375
BsrGI TGTACA 1 cut(s) 152
BsrI ACTGG 2 cut(s) 163, 209
BssAI RCCGGY 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 453
Bst6I CTCTTC 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 142
BstAUI TGTACA 1 cut(s) 152
BstF5I GGATG 4 cut(s) 10, 109, 291, 355
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 4 cut(s) 10, 109, 291, 355
CaiI CAGNNNCTG 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 375
Csp6I GTAC 3 cut(s) 94, 153, 186
CspAI ACCGGT 1 cut(s) 375
CviAII CATG 1 cut(s) 71
CviJI RGCY 4 cut(s) 44, 332, 356, 371
CviKI_1 RGCY 4 cut(s) 44, 332, 356, 371
CviQI GTAC 3 cut(s) 94, 153, 186
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 74
FaiI YATR 6 cut(s) 72, 89, 174, 240, 391, 393
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 42, 369
FokI GGATG 4 cut(s) 17, 116, 298, 362
Fsp4HI GCNGC 2 cut(s) 42, 369
FspBI CTAG 1 cut(s) 505
GluI GCNGC 2 cut(s) 42, 369
HaeIII GGCC 1 cut(s) 332
HapII CCGG 1 cut(s) 376
Hin1II CATG 1 cut(s) 74
HinfI GANTC 1 cut(s) 205
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 311, 496
Hpy188III TCNNGA 2 cut(s) 131, 178
HpyAV CCTTC 2 cut(s) 25, 238
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4V TGCA 3 cut(s) 172, 319, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
Hsp92II CATG 1 cut(s) 74
KpnI GGTACC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 5 cut(s) 176, 222, 247, 314, 389
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 2 cut(s) 159, 394
MaeI CTAG 1 cut(s) 505
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 5 cut(s) 193, 241, 394, 413, 493
MfeI CAATTG 1 cut(s) 320
MluCI AATT 6 cut(s) 11, 233, 304, 320, 335, 385
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 6 cut(s) 282, 333, 346, 461, 473, 476
Mph1103I ATGCAT 1 cut(s) 174
MroXI GAANNNNTTC 2 cut(s) 233, 444
MspI CCGG 1 cut(s) 376
MunI CAATTG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 1 cut(s) 58
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 2 cut(s) 95, 447
NsiI ATGCAT 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 427
PdmI GAANNNNTTC 2 cut(s) 233, 444
PinAI ACCGGT 1 cut(s) 375
PkrI GCNGC 2 cut(s) 43, 370
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 95, 447
PstNI CAGNNNCTG 1 cut(s) 215
RsaI GTAC 3 cut(s) 95, 154, 187
RsaNI GTAC 3 cut(s) 94, 153, 186
SatI GCNGC 2 cut(s) 42, 369
Sau3AI GATC 1 cut(s) 58
SchI GAGTC 1 cut(s) 214
SetI ASST 9 cut(s) 46, 95, 99, 196, 447, 472, 487, 491, 501
SfaNI GCATC 2 cut(s) 159, 394
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 6 cut(s) 11, 233, 304, 320, 335, 385
SsiI CCGC 1 cut(s) 368
SspMI CTAG 1 cut(s) 505
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 453
TaqI TCGA 1 cut(s) 177
TasI AATT 6 cut(s) 11, 233, 304, 320, 335, 385
TatI WGTACW 1 cut(s) 152
TauI GCSGC 1 cut(s) 371
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 24, 59, 378, 378
TspGWI ACGGA 1 cut(s) 424
XapI RAATTY 3 cut(s) 11, 233, 385
XmnI GAANNNNTTC 2 cut(s) 233, 444
XspI CTAG 1 cut(s) 505
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.