Rorug01G0306200

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000297
Physical Location & Seq
Forward (+)
42271346 .. 42271731
386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0306200.1

Sequence Viewer

Length: 282 bp
ATGAAATTCTCACCTCTAAAAAGTGACAAGGTTCTGAGCAAGAAGCCCCCTACTCCTCACCTGCGAGTTGTGGCTGATTATCTGTTGGATGCAACAACTAAAGAAGCCAACAAGAGAGTTAAGCTTGCGAGAGCTGCAATGGGTAACAACAACCCTGGTTGCCGTGGATTCAAGAAAGATAAGGACCGCCTTAAGTCTCTCAGTGCTCAGGGACCCAAGAAAGGAAGATGGGAAAGAAAAGATGGCAGTGACAACCATAAGCAAAAAAGGCAAAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

93

Amino Acids

10.53

Weight (kDa)

10.54

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 69
AciI CCGC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 221
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 2 cut(s) 124, 134
AluI AGCT 2 cut(s) 124, 134
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 5
AspS9I GGNCC 2 cut(s) 184, 212
AsuHPI GGTGA 2 cut(s) 3, 50
AvaII GGWCC 2 cut(s) 184, 212
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 121
BccI CCATC 2 cut(s) 222, 236
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 2 cut(s) 184, 212
BmgT120I GGNCC 2 cut(s) 184, 212
BmiI GGNNCC 2 cut(s) 213, 214
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 154, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 154, 163
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 3 cut(s) 26, 214, 221
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 208
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 208
BspACI CCGC 1 cut(s) 187
BspCNI CTCAG 3 cut(s) 27, 213, 220
BspLI GGNNCC 2 cut(s) 213, 214
BspMI ACCTGC 1 cut(s) 69
BspTI CTTAAG 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 154, 163
Bst2UI CCWGG 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 3 cut(s) 35, 200, 207
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 134, 268
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 208, 253
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 184, 212
CviJI RGCY 5 cut(s) 46, 74, 107, 124, 134
CviKI_1 RGCY 5 cut(s) 46, 74, 107, 124, 134
DdeI CTNAG 3 cut(s) 35, 200, 207
Eco47I GGWCC 2 cut(s) 184, 212
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 154
FaiI YATR 1 cut(s) 258
FaqI GGGAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 1 cut(s) 168
HphI GGTGA 2 cut(s) 3, 50
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 92, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 268
HpyF3I CTNAG 3 cut(s) 35, 200, 207
KflI GGGWCCC 1 cut(s) 212
LpnPI CCDG 4 cut(s) 74, 141, 168, 194
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 3 cut(s) 23, 143, 248
MboII GAAGA 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 2 cut(s) 24, 66
MseI TTAA 3 cut(s) 120, 192, 280
MspCI CTTAAG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 134, 268
NlaIV GGNNCC 2 cut(s) 213, 214
NmuCI GTSAC 2 cut(s) 23, 248
PaqCI CACCTGC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 213, 214
PspPI GGNCC 2 cut(s) 184, 212
PspPPI RGGWCCY 1 cut(s) 212
SaqAI TTAA 3 cut(s) 120, 192, 280
SatI GCNGC 1 cut(s) 135
Sau96I GGNCC 2 cut(s) 184, 212
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 208
SetI ASST 5 cut(s) 16, 33, 63, 126, 136
SfaNI GCATC 1 cut(s) 79
SinI GGWCC 2 cut(s) 184, 212
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 5
SsiI CCGC 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 154
TasI AATT 1 cut(s) 5
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 3 cut(s) 120, 192, 280
Tru9I TTAA 3 cut(s) 120, 192, 280
TscAI CASTG 2 cut(s) 208, 253
TseFI GTSAC 2 cut(s) 23, 248
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 2 cut(s) 23, 248
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 208, 253
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 184, 212
XapI RAATTY 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.