Transcription elongation factor B polypeptide
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 320 - 368 | 1.2e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 329 - 375 | 1.8e-09 | PPR repeat family |
| PPR | PF01535 | 332 - 362 | 6.1e-06 | PPR repeat |
| PPR_2 | PF13041 | 430 - 471 | 1.6e-10 | PPR repeat family |
| PPR | PF01535 | 434 - 463 | 2.4e-06 | PPR repeat |
| PPR_3 | PF13812 | 454 - 513 | 1e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 462 - 494 | 5.4e-06 | PPR repeat |
| PPR_2 | PF13041 | 465 - 512 | 8.6e-12 | PPR repeat family |
| PPR | PF01535 | 468 - 498 | 5.1e-06 | PPR repeat |
| PPR_3 | PF13812 | 491 - 548 | 2.8e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 500 - 548 | 5.4e-09 | PPR repeat family |
| PPR_2 | PF13041 | 604 - 649 | 3.3e-12 | PPR repeat family |
| PPR | PF01535 | 605 - 634 | 8.9e-06 | PPR repeat |
| E_motif | PF20431 | 719 - 781 | 1.1e-17 | E motif |
| DYW_deaminase | PF14432 | 817 - 909 | 1.2e-34 | DYW family of nucleic acid deaminases |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2720 |
| Acc16I | TGCGCA | 1 cut(s) | 2371 |
| Acc36I | ACCTGC | 1 cut(s) | 2720 |
| AccI | GTMKAC | 1 cut(s) | 1224 |
| AccII | CGCG | 1 cut(s) | 1890 |
| AciI | CCGC | 3 cut(s) | 387, 1890, 2270 |
| AcoI | YGGCCR | 3 cut(s) | 3, 207, 2535 |
| AcsI | RAATTY | 7 cut(s) | 224, 421, 753, 790, 1093, 1161, 1306 |
| AcuI | CTGAAG | 1 cut(s) | 2677 |
| AcyI | GRCGYC | 1 cut(s) | 2115 |
| AfaI | GTAC | 4 cut(s) | 824, 1745, 2475, 2677 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1504, 2124, 2396, 2695 |
| AflIII | ACRYGT | 2 cut(s) | 1227, 2634 |
| AhlI | ACTAGT | 1 cut(s) | 1109 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1084, 1116 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1468, 1500 |
| Alw21I | GWGCWC | 4 cut(s) | 120, 736, 1997, 2711 |
| Alw26I | GTCTC | 1 cut(s) | 2171 |
| Alw44I | GTGCAC | 1 cut(s) | 2707 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1130, 2180 |
| AoxI | GGCC | 4 cut(s) | 3, 207, 1863, 2535 |
| ApaLI | GTGCAC | 1 cut(s) | 2707 |
| ApeKI | GCWGC | 7 cut(s) | 245, 664, 857, 1903, 2183, 2512, 2624 |
| ApoI | RAATTY | 7 cut(s) | 224, 421, 753, 790, 1093, 1161, 1306 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2621, 2653 |
| AseI | ATTAAT | 1 cut(s) | 513 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 336, 1700, 1979 |
| AspLEI | GCGC | 3 cut(s) | 709, 1890, 2372 |
| AsuC2I | CCSGG | 1 cut(s) | 1081 |
| AsuHPI | GGTGA | 7 cut(s) | 14, 125, 242, 646, 1679, 2323, 2678 |
| AsuII | TTCGAA | 1 cut(s) | 548 |
| BaeGI | GKGCMC | 1 cut(s) | 2711 |
| BalI | TGGCCA | 3 cut(s) | 5, 209, 2537 |
| BanII | GRGCYC | 2 cut(s) | 120, 1191 |
| BbsI | GAAGAC | 1 cut(s) | 66 |
| Bbv12I | GWGCWC | 4 cut(s) | 120, 736, 1997, 2711 |
| BbvI | GCAGC | 7 cut(s) | 232, 676, 844, 1915, 2195, 2499, 2636 |
| BccI | CCATC | 8 cut(s) | 25, 624, 768, 1064, 1586, 1965, 2259, 2666 |
| BceAI | ACGGC | 2 cut(s) | 1048, 2477 |
| BclI | TGATCA | 3 cut(s) | 465, 877, 2347 |
| BcnI | CCSGG | 1 cut(s) | 1081 |
| BcoDI | GTCTC | 1 cut(s) | 2171 |
| BcuI | ACTAGT | 1 cut(s) | 1109 |
| BfaI | CTAG | 6 cut(s) | 11, 66, 237, 299, 842, 1110 |
| BfmI | CTRYAG | 4 cut(s) | 1458, 1901, 2181, 2622 |
| BfuAI | ACCTGC | 1 cut(s) | 2720 |
| BisI | GCNGC | 7 cut(s) | 246, 665, 858, 1904, 2184, 2513, 2625 |
| BlsI | GCNGC | 7 cut(s) | 247, 666, 859, 1905, 2185, 2514, 2626 |
| Bme1390I | CCNGG | 1 cut(s) | 1081 |
| BmiI | GGNNCC | 1 cut(s) | 2208 |
| BmrFI | CCNGG | 1 cut(s) | 1081 |
| BmsI | GCATC | 7 cut(s) | 931, 1066, 1339, 1900, 2088, 2479, 2499 |
| BoxI | GACNNNNGTC | 1 cut(s) | 102 |
| BpiI | GAAGAC | 1 cut(s) | 66 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2015, 2047 |
| BpmI | CTGGAG | 1 cut(s) | 811 |
| Bpu14I | TTCGAA | 1 cut(s) | 548 |
| BpuEI | CTTGAG | 5 cut(s) | 104, 326, 374, 1550, 2651 |
| BpuMI | CCSGG | 1 cut(s) | 1081 |
| BsaHI | GRCGYC | 1 cut(s) | 2115 |
| BsaJI | CCNNGG | 1 cut(s) | 284 |
| BsaWI | WCCGGW | 2 cut(s) | 1016, 1393 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1504, 2124, 2396, 2695 |
| Bse1I | ACTGG | 2 cut(s) | 553, 2538 |
| Bse3DI | GCAATG | 3 cut(s) | 255, 1440, 2722 |
| BseDI | CCNNGG | 1 cut(s) | 284 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1504, 2124, 2396, 2695 |
| BseMI | GCAATG | 3 cut(s) | 255, 1440, 2722 |
| BseMII | CTCAG | 2 cut(s) | 1965, 2507 |
| BseNI | ACTGG | 2 cut(s) | 553, 2538 |
| BseSI | GKGCMC | 1 cut(s) | 2711 |
| BseXI | GCAGC | 7 cut(s) | 232, 676, 844, 1915, 2195, 2499, 2636 |
| BsgI | GTGCAG | 3 cut(s) | 255, 906, 1662 |
| Bsh1236I | CGCG | 1 cut(s) | 1890 |
| BshFI | GGCC | 4 cut(s) | 5, 209, 1865, 2537 |
| BsiHKAI | GWGCWC | 4 cut(s) | 120, 736, 1997, 2711 |
| BsiSI | CCGG | 5 cut(s) | 986, 1017, 1080, 1394, 2111 |
| BslFI | GGGAC | 1 cut(s) | 538 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1504, 2124, 2396, 2695 |
| BsmAI | GTCTC | 1 cut(s) | 2171 |
| BsmFI | GGGAC | 1 cut(s) | 538 |
| BsmI | GAATGC | 1 cut(s) | 1074 |
| BsnI | GGCC | 4 cut(s) | 5, 209, 1865, 2537 |
| Bsp119I | TTCGAA | 1 cut(s) | 548 |
| Bsp1286I | GDGCHC | 5 cut(s) | 120, 736, 1191, 1997, 2711 |
| Bsp1407I | TGTACA | 2 cut(s) | 1743, 2473 |
| Bsp143I | GATC | 3 cut(s) | 465, 877, 2347 |
| Bsp19I | CCATGG | 1 cut(s) | 284 |
| BspACI | CCGC | 3 cut(s) | 387, 1890, 2270 |
| BspANI | GGCC | 4 cut(s) | 5, 209, 1865, 2537 |
| BspCNI | CTCAG | 2 cut(s) | 1964, 2508 |
| BspFNI | CGCG | 1 cut(s) | 1890 |
| BspLI | GGNNCC | 1 cut(s) | 2208 |
| BspMAI | CTGCAG | 3 cut(s) | 1905, 2185, 2626 |
| BspMI | ACCTGC | 1 cut(s) | 2720 |
| BspT104I | TTCGAA | 1 cut(s) | 548 |
| BsrDI | GCAATG | 3 cut(s) | 255, 1440, 2722 |
| BsrGI | TGTACA | 2 cut(s) | 1743, 2473 |
| BsrI | ACTGG | 2 cut(s) | 553, 2538 |
| BssECI | CCNNGG | 1 cut(s) | 284 |
| BssMI | GATC | 3 cut(s) | 465, 877, 2347 |
| BssNI | GRCGYC | 1 cut(s) | 2115 |
| BssT1I | CCWWGG | 1 cut(s) | 284 |
| Bst4CI | ACNGT | 3 cut(s) | 72, 1370, 1682 |
| Bst6I | CTCTTC | 5 cut(s) | 297, 916, 1032, 1058, 1665 |
| BstACI | GRCGYC | 1 cut(s) | 2115 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 149, 1610, 2180, 2721 |
| BstAUI | TGTACA | 2 cut(s) | 1743, 2473 |
| BstBI | TTCGAA | 1 cut(s) | 548 |
| BstC8I | GCNNGC | 2 cut(s) | 456, 1756 |
| BstDEI | CTNAG | 3 cut(s) | 1399, 1951, 2516 |
| BstDSI | CCRYGG | 1 cut(s) | 284 |
| BstFNI | CGCG | 1 cut(s) | 1890 |
| BstHHI | GCGC | 3 cut(s) | 709, 1890, 2372 |
| BstKTI | GATC | 3 cut(s) | 468, 880, 2350 |
| BstMAI | GTCTC | 1 cut(s) | 2171 |
| BstMBI | GATC | 3 cut(s) | 465, 877, 2347 |
| BstNSI | RCATGY | 3 cut(s) | 458, 1231, 2638 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 102 |
| BstSCI | CCNGG | 1 cut(s) | 1079 |
| BstSFI | CTRYAG | 4 cut(s) | 1458, 1901, 2181, 2622 |
| BstSLI | GKGCMC | 1 cut(s) | 2711 |
| BstUI | CGCG | 1 cut(s) | 1890 |
| BstV1I | GCAGC | 7 cut(s) | 232, 676, 844, 1915, 2195, 2499, 2636 |
| BstV2I | GAAGAC | 1 cut(s) | 66 |
| BsuRI | GGCC | 4 cut(s) | 5, 209, 1865, 2537 |
| BtgI | CCRYGG | 1 cut(s) | 284 |
| BtsIMutI | CAGTG | 3 cut(s) | 141, 1678, 2646 |
| BveI | ACCTGC | 1 cut(s) | 2720 |
| Cac8I | GCNNGC | 2 cut(s) | 456, 1756 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1130, 2180 |
| CfoI | GCGC | 3 cut(s) | 709, 1890, 2372 |
| CseI | GACGC | 1 cut(s) | 2123 |
| Csp6I | GTAC | 4 cut(s) | 823, 1744, 2474, 2676 |
| CviQI | GTAC | 4 cut(s) | 823, 1744, 2474, 2676 |
| DdeI | CTNAG | 3 cut(s) | 1399, 1951, 2516 |
| DpnI | GATC | 3 cut(s) | 467, 879, 2349 |
| DpnII | GATC | 3 cut(s) | 465, 877, 2347 |
| EaeI | YGGCCR | 3 cut(s) | 3, 207, 2535 |
| Eam1104I | CTCTTC | 5 cut(s) | 297, 916, 1032, 1058, 1665 |
| EarI | CTCTTC | 5 cut(s) | 297, 916, 1032, 1058, 1665 |
| EciI | GGCGGA | 1 cut(s) | 2285 |
| Ecl136II | GAGCTC | 1 cut(s) | 118 |
| Eco130I | CCWWGG | 1 cut(s) | 284 |
| Eco24I | GRGCYC | 2 cut(s) | 120, 1191 |
| Eco32I | GATATC | 1 cut(s) | 1317 |
| Eco53kI | GAGCTC | 1 cut(s) | 118 |
| Eco57I | CTGAAG | 1 cut(s) | 2677 |
| EcoICRI | GAGCTC | 1 cut(s) | 118 |
| EcoRI | GAATTC | 1 cut(s) | 1306 |
| EcoRV | GATATC | 1 cut(s) | 1317 |
| EcoT14I | CCWWGG | 1 cut(s) | 284 |
| EcoT22I | ATGCAT | 2 cut(s) | 456, 573 |
| EcoT38I | GRGCYC | 2 cut(s) | 120, 1191 |
| ErhI | CCWWGG | 1 cut(s) | 284 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1035, 1067 |
| FaqI | GGGAC | 1 cut(s) | 538 |
| FauNDI | CATATG | 1 cut(s) | 2361 |
| FbaI | TGATCA | 3 cut(s) | 465, 877, 2347 |
| FblI | GTMKAC | 1 cut(s) | 1224 |
| Fnu4HI | GCNGC | 7 cut(s) | 246, 665, 858, 1904, 2184, 2513, 2625 |
| FriOI | GRGCYC | 2 cut(s) | 120, 1191 |
| Fsp4HI | GCNGC | 7 cut(s) | 246, 665, 858, 1904, 2184, 2513, 2625 |
| FspBI | CTAG | 6 cut(s) | 11, 66, 237, 299, 842, 1110 |
| FspI | TGCGCA | 1 cut(s) | 2371 |
| GlaI | GCGC | 3 cut(s) | 708, 1889, 2371 |
| GluI | GCNGC | 7 cut(s) | 246, 665, 858, 1904, 2184, 2513, 2625 |
| GsuI | CTGGAG | 1 cut(s) | 811 |
| HaeIII | GGCC | 4 cut(s) | 5, 209, 1865, 2537 |
| HapII | CCGG | 5 cut(s) | 986, 1017, 1080, 1394, 2111 |
| HgaI | GACGC | 1 cut(s) | 2123 |
| HhaI | GCGC | 3 cut(s) | 709, 1890, 2372 |
| Hin1I | GRCGYC | 1 cut(s) | 2115 |
| Hin6I | GCGC | 3 cut(s) | 707, 1888, 2370 |
| HinP1I | GCGC | 3 cut(s) | 707, 1888, 2370 |
| HincII | GTYRAC | 2 cut(s) | 1379, 1494 |
| HindII | GTYRAC | 2 cut(s) | 1379, 1494 |
| HindIII | AAGCTT | 3 cut(s) | 714, 1635, 2076 |
| HinfI | GANTC | 8 cut(s) | 233, 785, 866, 1375, 1386, 1549, 2191, 2518 |
| HpaI | GTTAAC | 1 cut(s) | 1494 |
| HpaII | CCGG | 5 cut(s) | 986, 1017, 1080, 1394, 2111 |
| HphI | GGTGA | 7 cut(s) | 14, 125, 242, 646, 1679, 2323, 2678 |
| Hpy166II | GTNNAC | 7 cut(s) | 955, 1225, 1379, 1494, 1538, 2474, 2709 |
| Hpy188I | TCNGA | 7 cut(s) | 976, 1132, 1476, 1766, 2352, 2434, 2611 |
| Hpy8I | GTNNAC | 7 cut(s) | 955, 1225, 1379, 1494, 1538, 2474, 2709 |
| Hpy99I | CGWCG | 1 cut(s) | 1739 |
| HpyCH4III | ACNGT | 3 cut(s) | 72, 1370, 1682 |
| HpyF3I | CTNAG | 3 cut(s) | 1399, 1951, 2516 |
| Hsp92I | GRCGYC | 1 cut(s) | 2115 |
| HspAI | GCGC | 3 cut(s) | 707, 1888, 2370 |
| Ksp22I | TGATCA | 3 cut(s) | 465, 877, 2347 |
| KspAI | GTTAAC | 1 cut(s) | 1494 |
| Kzo9I | GATC | 3 cut(s) | 465, 877, 2347 |
| LmnI | GCTCC | 5 cut(s) | 19, 50, 1892, 2017, 2331 |
| Lsp1109I | GCAGC | 7 cut(s) | 232, 676, 844, 1915, 2195, 2499, 2636 |
| LweI | GCATC | 7 cut(s) | 931, 1066, 1339, 1900, 2088, 2479, 2499 |
| MaeI | CTAG | 6 cut(s) | 11, 66, 237, 299, 842, 1110 |
| MaeIII | GTNAC | 5 cut(s) | 215, 994, 1402, 1682, 2519 |
| MalI | GATC | 3 cut(s) | 467, 879, 2349 |
| MboI | GATC | 3 cut(s) | 465, 877, 2347 |
| MhlI | GDGCHC | 5 cut(s) | 120, 736, 1191, 1997, 2711 |
| MlsI | TGGCCA | 3 cut(s) | 5, 209, 2537 |
| MluNI | TGGCCA | 3 cut(s) | 5, 209, 2537 |
| MlyI | GAGTC | 2 cut(s) | 1384, 2527 |
| MmeI | TCCRAC | 5 cut(s) | 72, 195, 426, 2039, 2184 |
| Mox20I | TGGCCA | 3 cut(s) | 5, 209, 2537 |
| Mph1103I | ATGCAT | 2 cut(s) | 456, 573 |
| MroXI | GAANNNNTTC | 3 cut(s) | 336, 1700, 1979 |
| MscI | TGGCCA | 3 cut(s) | 5, 209, 2537 |
| MslI | CAYNNNNRTG | 4 cut(s) | 762, 1232, 1829, 2639 |
| Msp20I | TGGCCA | 3 cut(s) | 5, 209, 2537 |
| MspA1I | CMGCKG | 3 cut(s) | 245, 667, 1360 |
| MspI | CCGG | 5 cut(s) | 986, 1017, 1080, 1394, 2111 |
| MspR9I | CCNGG | 1 cut(s) | 1081 |
| Mva1269I | GAATGC | 1 cut(s) | 1074 |
| MvnI | CGCG | 1 cut(s) | 1890 |
| NciI | CCSGG | 1 cut(s) | 1081 |
| NcoI | CCATGG | 1 cut(s) | 284 |
| NdeI | CATATG | 1 cut(s) | 2361 |
| NdeII | GATC | 3 cut(s) | 465, 877, 2347 |
| NlaIV | GGNNCC | 1 cut(s) | 2208 |
| NmuCI | GTSAC | 4 cut(s) | 994, 1402, 1682, 2519 |
| NsbI | TGCGCA | 1 cut(s) | 2371 |
| NsiI | ATGCAT | 2 cut(s) | 456, 573 |
| NspI | RCATGY | 3 cut(s) | 458, 1231, 2638 |
| NspV | TTCGAA | 1 cut(s) | 548 |
| PaeI | GCATGC | 1 cut(s) | 458 |
| PaqCI | CACCTGC | 1 cut(s) | 2720 |
| PciI | ACATGT | 2 cut(s) | 1227, 2634 |
| PctI | GAATGC | 1 cut(s) | 1074 |
| PdmI | GAANNNNTTC | 3 cut(s) | 336, 1700, 1979 |
| PfeI | GAWTC | 6 cut(s) | 233, 785, 866, 1386, 1549, 2191 |
| PkrI | GCNGC | 7 cut(s) | 247, 666, 859, 1905, 2185, 2514, 2626 |
| PleI | GAGTC | 2 cut(s) | 1383, 2526 |
| PpsI | GAGTC | 2 cut(s) | 1383, 2526 |
| PscI | ACATGT | 2 cut(s) | 1227, 2634 |
| PshAI | GACNNNNGTC | 1 cut(s) | 102 |
| PshBI | ATTAAT | 1 cut(s) | 513 |
| Psp124BI | GAGCTC | 1 cut(s) | 120 |
| PspN4I | GGNNCC | 1 cut(s) | 2208 |
| PstI | CTGCAG | 3 cut(s) | 1905, 2185, 2626 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1130, 2180 |
| PvuII | CAGCTG | 3 cut(s) | 245, 667, 1360 |
| RsaI | GTAC | 4 cut(s) | 824, 1745, 2475, 2677 |
| RsaNI | GTAC | 4 cut(s) | 823, 1744, 2474, 2676 |
| RseI | CAYNNNNRTG | 4 cut(s) | 762, 1232, 1829, 2639 |
| SacI | GAGCTC | 1 cut(s) | 120 |
| SatI | GCNGC | 7 cut(s) | 246, 665, 858, 1904, 2184, 2513, 2625 |
| Sau3AI | GATC | 3 cut(s) | 465, 877, 2347 |
| SchI | GAGTC | 2 cut(s) | 1384, 2527 |
| ScrFI | CCNGG | 1 cut(s) | 1081 |
| SduI | GDGCHC | 5 cut(s) | 120, 736, 1191, 1997, 2711 |
| SfaNI | GCATC | 7 cut(s) | 931, 1066, 1339, 1900, 2088, 2479, 2499 |
| SfcI | CTRYAG | 4 cut(s) | 1458, 1901, 2181, 2622 |
| SfuI | TTCGAA | 1 cut(s) | 548 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 762, 1232, 1829, 2639 |
| SmlI | CTYRAG | 5 cut(s) | 119, 341, 353, 1565, 2666 |
| SmoI | CTYRAG | 5 cut(s) | 119, 341, 353, 1565, 2666 |
| SpeI | ACTAGT | 1 cut(s) | 1109 |
| SphI | GCATGC | 1 cut(s) | 458 |
| SsiI | CCGC | 3 cut(s) | 387, 1890, 2270 |
| SspMI | CTAG | 6 cut(s) | 11, 66, 237, 299, 842, 1110 |
| SstI | GAGCTC | 1 cut(s) | 120 |
| StyD4I | CCNGG | 1 cut(s) | 1079 |
| StyI | CCWWGG | 1 cut(s) | 284 |
| TaaI | ACNGT | 3 cut(s) | 72, 1370, 1682 |
| TaqI | TCGA | 8 cut(s) | 548, 788, 902, 1191, 1737, 1962, 1983, 2277 |
| TatI | WGTACW | 3 cut(s) | 822, 1743, 2473 |
| TfiI | GAWTC | 6 cut(s) | 233, 785, 866, 1386, 1549, 2191 |
| TscAI | CASTG | 3 cut(s) | 141, 1685, 2646 |
| TseFI | GTSAC | 4 cut(s) | 994, 1402, 1682, 2519 |
| TseI | GCWGC | 7 cut(s) | 245, 664, 857, 1903, 2183, 2512, 2624 |
| Tsp45I | GTSAC | 4 cut(s) | 994, 1402, 1682, 2519 |
| TspGWI | ACGGA | 1 cut(s) | 1708 |
| TspRI | CASTG | 3 cut(s) | 141, 1685, 2646 |
| VneI | GTGCAC | 1 cut(s) | 2707 |
| VspI | ATTAAT | 1 cut(s) | 513 |
| XapI | RAATTY | 7 cut(s) | 224, 421, 753, 790, 1093, 1161, 1306 |
| XbaI | TCTAGA | 1 cut(s) | 298 |
| XceI | RCATGY | 3 cut(s) | 458, 1231, 2638 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 217 |
| XmiI | GTMKAC | 1 cut(s) | 1224 |
| XmnI | GAANNNNTTC | 3 cut(s) | 336, 1700, 1979 |
| XspI | CTAG | 6 cut(s) | 11, 66, 237, 299, 842, 1110 |
| Zsp2I | ATGCAT | 2 cut(s) | 456, 573 |