pycom11g05390

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000297
Physical Location & Seq
Forward (+)
4134826 .. 4135185
360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05390.1

Sequence Viewer

Length: 360 bp
ATGGAGGAGTTCGGTGCTTTGATGGCTGATCAGGTGGTCGAAAACACCAAGAAGTTGAATACCGCATTCAATTGGAAAGAGCTCTACAAGGCGAAGGTGGAGGAGGTCAACAAGAAAGAAAATAAGACAGCTGAGAGGTTGAAGAGTCGGCATCAAATGGAAGCTTCTCCGAAACAATGCCGGCAAGTTTTTGTTGGTACAGAGGCAGAGGTTCCATCATTATCAAGAACCAGCAAAAGTAGCAGCAGCAGCAATGAGTTACTGAGCTTGCTTGATAGCCCAGGCCTTGGTGTTGGCAGCGACAATGTTTCTGTCCGAAGAAAGGAAAGCTTGATCATGAGGAAAGCAAAGAGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

120

Amino Acids

13.35

Weight (kDa)

9.41

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 287
AciI CCGC 1 cut(s) 63
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 287, 322
AgsI TTSAA 3 cut(s) 58, 70, 142
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 5 cut(s) 82, 131, 164, 267, 330
AluI AGCT 5 cut(s) 82, 131, 164, 267, 330
Alw21I GWGCWC 1 cut(s) 84
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 4 cut(s) 243, 246, 249, 297
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 4 cut(s) 255, 258, 261, 309
BccI CCATC 2 cut(s) 16, 223
BciT130I CCWGG 1 cut(s) 282
BclI TGATCA 2 cut(s) 28, 333
BisI GCNGC 4 cut(s) 244, 247, 250, 298
BlsI GCNGC 4 cut(s) 245, 248, 251, 299
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 280, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 322
Bse118I RCCGGY 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 280, 286
BseLI CCNNNNNNNGG 2 cut(s) 287, 322
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 123, 254
BseRI GAGGAG 2 cut(s) 20, 116
BseXI GCAGC 4 cut(s) 255, 258, 261, 309
BshFI GGCC 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 287, 322
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 28, 333
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 124, 255
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 280, 286
BssMI GATC 2 cut(s) 28, 333
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 182, 269
BstDEI CTNAG 2 cut(s) 132, 263
BstKTI GATC 2 cut(s) 31, 336
BstMBI GATC 2 cut(s) 28, 333
BstMWI GCNNNNNNNGC 3 cut(s) 23, 240, 249
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstV1I GCAGC 4 cut(s) 255, 258, 261, 309
BsuRI GGCC 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 182, 269
CciI TCATGA 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 180
Csp6I GTAC 1 cut(s) 198
CviAII CATG 1 cut(s) 337
CviJI RGCY 8 cut(s) 26, 82, 131, 164, 267, 279, 285, 330
CviKI_1 RGCY 8 cut(s) 26, 82, 131, 164, 267, 279, 285, 330
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 2 cut(s) 132, 263
DpnI GATC 2 cut(s) 30, 335
DpnII GATC 2 cut(s) 28, 333
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 340
FaiI YATR 1 cut(s) 338
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 1 cut(s) 336
FbaI TGATCA 2 cut(s) 28, 333
Fnu4HI GCNGC 4 cut(s) 244, 247, 250, 298
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 4 cut(s) 244, 247, 250, 298
GluI GCNGC 4 cut(s) 244, 247, 250, 298
HaeIII GGCC 1 cut(s) 285
HapII CCGG 1 cut(s) 181
Hin1II CATG 1 cut(s) 340
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 2 cut(s) 162, 328
HinfI GANTC 1 cut(s) 145
HpaII CCGG 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 171, 317
Hpy188III TCNNGA 2 cut(s) 225, 337
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 240, 249
HpyF3I CTNAG 2 cut(s) 132, 263
Hsp92II CATG 1 cut(s) 340
KroI GCCGGC 1 cut(s) 180
KroNI GCCGGC 1 cut(s) 182
Ksp22I TGATCA 2 cut(s) 28, 333
Kzo9I GATC 2 cut(s) 28, 333
LpnPI CCDG 5 cut(s) 17, 194, 244, 267, 294
Lsp1109I GCAGC 4 cut(s) 255, 258, 261, 309
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 258, 353
MalI GATC 2 cut(s) 30, 335
MboI GATC 2 cut(s) 28, 333
MboII GAAGA 2 cut(s) 154, 330
MfeI CAATTG 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 70
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 6 cut(s) 94, 97, 129, 196, 202, 333
MroNI GCCGGC 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 282
MunI CAATTG 1 cut(s) 70
Mva1269I GAATGC 1 cut(s) 65
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 23, 240, 249
NaeI GCCGGC 1 cut(s) 182
NdeII GATC 2 cut(s) 28, 333
NgoMIV GCCGGC 1 cut(s) 180
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 213
PagI TCATGA 1 cut(s) 336
PceI AGGCCT 1 cut(s) 285
PctI GAATGC 1 cut(s) 65
PdiI GCCGGC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 4 cut(s) 245, 248, 251, 299
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SacI GAGCTC 1 cut(s) 84
SatI GCNGC 4 cut(s) 244, 247, 250, 298
Sau3AI GATC 2 cut(s) 28, 333
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 1 cut(s) 160
Sse9I AATT 1 cut(s) 70
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 1 cut(s) 63
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 286
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 70
TseI GCWGC 4 cut(s) 243, 246, 249, 297
Van91I CCANNNNNTGG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.