RLG00000027578

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000297
Physical Location & Seq
Reverse (-)
12866369 .. 12867034
666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027578

Sequence Viewer

Length: 666 bp
ATGGAAACCACAGAGCTCACTCACTTCACTCACAAAGCAACCATCATCACAATGGAGAAGGGAAGGCTAATCCGTCTGAATGATCACTGGGTCTCCATTGCTATAGACAATCTTGATTCTTTTGGGGATGTTGGGTACCTAGATTTCAGGTTTCTTGATCAACTCTTACCCCACTGCTCCAAAGACCAGTTGATTCACATCGAGAAGTGCACAAAAGATACAGACCTAACTCCGATCACCGATAAGCTTTGGAAGAAGTTCTTTGAGAGAGACTTCGGTGGCAAAGCCACTGATGAGGTCATCGAGAAGATGAAGATCAAGAAAGTGAGCTTCAAGTGGTCGGAGTTGTACCAGGAAAAGTCCAAGAGACTGGAAAAGGCTGAGAAAGAAGTCGGTATAAGGTTGAAGAAGCTGTATGAGAAAGAAGCCGCTCGGAAACAAAGCCGGCAGATTAAGGTGTTGGACAAGGTTCCACCTTCTTCGTCAACCAACAACAGAAATGGCTCCAACAAAGATAGCAAACTGATGAGCAGATTGAGGAAAAAACATCTGAATTGTCTGGAAATGAGAAATATTCAAGCTATGAAGATGAAGAAAACTGCTACCAACTATTCTGGTCTCATCAAAAGGCCAAGAACGACTATTCGACCAATGAACGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

222

Amino Acids

25.95

Weight (kDa)

9.82

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 42 - 151 4.4e-22 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 135
AccBSI CCGCTC 1 cut(s) 431
AciI CCGC 1 cut(s) 429
AfaI GTAC 2 cut(s) 137, 350
AgsI TTSAA 3 cut(s) 334, 406, 578
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 5 cut(s) 16, 247, 330, 412, 581
AluI AGCT 5 cut(s) 16, 247, 330, 412, 581
Alw21I GWGCWC 2 cut(s) 18, 212
Alw26I GTCTC 4 cut(s) 97, 264, 361, 623
Alw44I GTGCAC 1 cut(s) 208
AoxI GGCC 1 cut(s) 629
ApaLI GTGCAC 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 257
Asp718I GGTACC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 18, 212
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 2 cut(s) 82, 157
BcoDI GTCTC 4 cut(s) 97, 264, 361, 623
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 353
BmiI GGNNCC 3 cut(s) 137, 471, 505
BmrFI CCNGG 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 97
BmuI ACTGGG 1 cut(s) 97
BsaBI GATNNNNATC 2 cut(s) 197, 314
BsaI GGTCTC 2 cut(s) 97, 623
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse118I RCCGGY 1 cut(s) 444
Bse1I ACTGG 3 cut(s) 92, 187, 375
Bse3DI GCAATG 1 cut(s) 96
Bse8I GATNNNNATC 2 cut(s) 197, 314
BseBI CCWGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 133
BseJI GATNNNNATC 2 cut(s) 197, 314
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 3 cut(s) 92, 187, 375
BseSI GKGCMC 1 cut(s) 212
BshFI GGCC 1 cut(s) 631
BshNI GGYRCC 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 18, 212
BsiSI CCGG 1 cut(s) 445
BsmAI GTCTC 4 cut(s) 97, 264, 361, 623
BsnI GGCC 1 cut(s) 631
Bso31I GGTCTC 2 cut(s) 97, 623
Bsp1286I GDGCHC 2 cut(s) 18, 212
Bsp143I GATC 4 cut(s) 82, 157, 234, 315
BspACI CCGC 1 cut(s) 429
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 3 cut(s) 137, 471, 505
BspT107I GGYRCC 1 cut(s) 135
BspTNI GGTCTC 2 cut(s) 97, 623
BsrBI CCGCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 444
BsrI ACTGG 3 cut(s) 92, 187, 375
BssAI RCCGGY 1 cut(s) 444
BssMI GATC 4 cut(s) 82, 157, 234, 315
Bst2UI CCWGG 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 4 cut(s) 85, 160, 237, 318
BstMAI GTCTC 4 cut(s) 97, 264, 361, 623
BstMBI GATC 4 cut(s) 82, 157, 234, 315
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 370
BsuRI GGCC 1 cut(s) 631
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 85, 172, 288
Cac8I GCNNGC 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 444
Csp6I GTAC 2 cut(s) 136, 349
CviQI GTAC 2 cut(s) 136, 349
DdeI CTNAG 1 cut(s) 381
DpnI GATC 4 cut(s) 84, 159, 236, 317
DpnII GATC 4 cut(s) 82, 157, 234, 315
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 2 cut(s) 97, 623
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 18
FaiI YATR 4 cut(s) 104, 398, 417, 584
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FbaI TGATCA 2 cut(s) 82, 157
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 140
GluI GCNGC 1 cut(s) 429
HaeIII GGCC 1 cut(s) 631
HapII CCGG 1 cut(s) 445
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 116, 193
HpaII CCGG 1 cut(s) 445
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 2 cut(s) 210, 486
Hpy188I TCNGA 5 cut(s) 78, 234, 343, 435, 552
Hpy188III TCNNGA 6 cut(s) 113, 155, 202, 304, 319, 560
Hpy8I GTNNAC 2 cut(s) 210, 486
HpyAV CCTTC 3 cut(s) 52, 57, 486
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 1 cut(s) 657
KpnI GGTACC 1 cut(s) 139
KroI GCCGGC 1 cut(s) 444
KroNI GCCGGC 1 cut(s) 446
Ksp22I TGATCA 2 cut(s) 82, 157
Kzo9I GATC 4 cut(s) 82, 157, 234, 315
LmnI GCTCC 2 cut(s) 182, 509
LpnPI CCDG 9 cut(s) 73, 133, 200, 338, 356, 365, 458, 545, 600
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 657
MalI GATC 4 cut(s) 84, 159, 236, 317
MbiI CCGCTC 1 cut(s) 431
MboI GATC 4 cut(s) 82, 157, 234, 315
MboII GAAGA 7 cut(s) 265, 319, 325, 418, 471, 598, 604
MhlI GDGCHC 2 cut(s) 18, 212
MluCI AATT 1 cut(s) 553
MmeI TCCRAC 3 cut(s) 321, 441, 531
MnlI CCTC 2 cut(s) 289, 531
MroNI GCCGGC 1 cut(s) 444
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
NaeI GCCGGC 1 cut(s) 446
NdeII GATC 4 cut(s) 82, 157, 234, 315
NgoMIV GCCGGC 1 cut(s) 444
NlaIV GGNNCC 3 cut(s) 137, 471, 505
PdiI GCCGGC 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 116, 193
PkrI GCNGC 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 3 cut(s) 137, 471, 505
RsaI GTAC 2 cut(s) 137, 350
RsaNI GTAC 2 cut(s) 136, 349
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 4 cut(s) 82, 157, 234, 315
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 2 cut(s) 18, 212
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 1 cut(s) 553
SsiI CCGC 1 cut(s) 429
SspI AATATT 1 cut(s) 574
SspMI CTAG 1 cut(s) 140
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 351
TaiI ACGT 1 cut(s) 660
TaqI TCGA 3 cut(s) 201, 303, 646
TasI AATT 1 cut(s) 553
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 2 cut(s) 116, 193
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 3 cut(s) 92, 179, 295
TspDTI ATGAA 3 cut(s) 326, 599, 605
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 3 cut(s) 92, 179, 295
VneI GTGCAC 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.