RLG00000023768

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000297
Physical Location & Seq
Forward (+)
28021608 .. 28022305
698 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023768

Sequence Viewer

Length: 630 bp
ATGGAAACCACAGACCTCACTCACTTCACTCGAAAAACAACCCTCACAATGGAGAAGGGAAGGTTGATACGTCTCGATGATCGTTGGGTCTCCATTGCAATAGACAATCTAGACTCTTTTGGGGATGTTGGGTACCTGGACTTCAAGTTTCTCGATCAGGTCTTACCTCACTGCTCCAAAGACCAGTTGATTCACATCGAAAAGAGCACAAAAGGCACAGACCTGACTCCGATCACCGATAAGCTTTGGAAGAAGTTCTTTGAGAGAGACTTCGGTAGCAAAGCCACTGATGAGGTGATCGAGAAGATGACGATCGGGAAAGTGAGTTCCAAGTGGTCGGAGTTGTATCAGGCCAAATCTAAAAGGCTGAAGAAGCTGTATGAGAAAGAAGCCGCCCGTAAACAAAGCCGGCAAGTGAGGGTTTTGGACAAGGCTCCTCCTTCTTCGTCAGGCAATAAAAGAATTGACTCCAACAAAGGGAGCAAACTGATGAAAAAAGTGAGGAAAGAGTATCTGAATTCTCTGGAGGTGAGAAATCTTGAAGCTATGAAGATGAAGAGAACTGCTGCCAAGTATTCTAGTCTGAGCAAAAAGCCAAGGACGACTATTCAAGCTATGAACATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

210

Amino Acids

24.22

Weight (kDa)

9.9

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 41 - 133 2.9e-17 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 1 cut(s) 393
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 49, 477
AgsI TTSAA 3 cut(s) 145, 542, 611
AjnI CCWGG 1 cut(s) 135
AloI GAACNNNNNNTCC 2 cut(s) 310, 342
AluBI AGCT 4 cut(s) 244, 376, 545, 614
AluI AGCT 4 cut(s) 244, 376, 545, 614
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 3 cut(s) 77, 94, 261
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 1 cut(s) 517
Asp700I GAANNNNTTC 1 cut(s) 254
Asp718I GGTACC 1 cut(s) 132
AsuHPI GGTGA 3 cut(s) 226, 307, 541
BanI GGYRCC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 553
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 77, 94, 261
BfaI CTAG 2 cut(s) 110, 579
BisI GCNGC 2 cut(s) 393, 567
BlsI GCNGC 2 cut(s) 394, 568
Bme1390I CCNGG 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 134, 435
BmrFI CCNGG 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 545
BsaBI GATNNNNATC 2 cut(s) 194, 311
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 596
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 477
Bse118I RCCGGY 1 cut(s) 408
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 2 cut(s) 194, 311
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 2 cut(s) 194, 311
BseLI CCNNNNNNNGG 2 cut(s) 49, 477
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 553
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 409
BslI CCNNNNNNNGG 2 cut(s) 49, 477
BsmAI GTCTC 3 cut(s) 77, 94, 261
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 353
Bso31I GGTCTC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 5 cut(s) 79, 154, 231, 297, 312
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 576
BspLI GGNNCC 2 cut(s) 134, 435
BspT107I GGYRCC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 408
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 5 cut(s) 79, 154, 231, 297, 312
BssT1I CCWWGG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 1 cut(s) 584
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 5 cut(s) 82, 157, 234, 300, 315
BstMAI GTCTC 3 cut(s) 77, 94, 261
BstMBI GATC 5 cut(s) 79, 154, 231, 297, 312
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 213, 373
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 553
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 169, 285
Cac8I GCNNGC 1 cut(s) 410
Cfr10I RCCGGY 1 cut(s) 408
Csp6I GTAC 1 cut(s) 133
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 584
DpnI GATC 5 cut(s) 81, 156, 233, 299, 314
DpnII GATC 5 cut(s) 79, 154, 231, 297, 312
Eam1104I CTCTTC 1 cut(s) 551
EarI CTCTTC 1 cut(s) 551
Eco130I CCWWGG 1 cut(s) 596
Eco31I GGTCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 596
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 3 cut(s) 381, 548, 617
FalI AAGNNNNNCTT 2 cut(s) 242, 274
Fnu4HI GCNGC 2 cut(s) 393, 567
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 393, 567
FspBI CTAG 2 cut(s) 110, 579
GluI GCNGC 2 cut(s) 393, 567
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 4 cut(s) 113, 190, 226, 467
HpaII CCGG 1 cut(s) 409
HphI GGTGA 3 cut(s) 226, 307, 541
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 4 cut(s) 231, 340, 516, 585
Hpy188III TCNNGA 7 cut(s) 74, 110, 152, 301, 316, 524, 539
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 49, 54, 450
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 373
HpyF3I CTNAG 1 cut(s) 584
HpySE526I ACGT 1 cut(s) 70
KpnI GGTACC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 408
KroNI GCCGGC 1 cut(s) 410
Kzo9I GATC 5 cut(s) 79, 154, 231, 297, 312
LmnI GCTCC 3 cut(s) 179, 439, 480
LpnPI CCDG 9 cut(s) 122, 143, 149, 197, 236, 335, 422, 435, 509
Lsp1109I GCAGC 1 cut(s) 553
MaeI CTAG 2 cut(s) 110, 579
MaeII ACGT 1 cut(s) 70
MalI GATC 5 cut(s) 81, 156, 233, 299, 314
MboI GATC 5 cut(s) 79, 154, 231, 297, 312
MboII GAAGA 6 cut(s) 262, 316, 382, 435, 562, 568
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 462, 517
MlyI GAGTC 3 cut(s) 107, 220, 461
MmeI TCCRAC 2 cut(s) 318, 495
MnlI CCTC 8 cut(s) 26, 53, 177, 286, 411, 447, 495, 520
MroNI GCCGGC 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 254
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 213, 373
NaeI GCCGGC 1 cut(s) 410
NdeII GATC 5 cut(s) 79, 154, 231, 297, 312
NgoMIV GCCGGC 1 cut(s) 408
NlaIV GGNNCC 2 cut(s) 134, 435
PdiI GCCGGC 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 394, 568
Ple19I CGATCG 1 cut(s) 315
PleI GAGTC 3 cut(s) 107, 220, 461
PpsI GAGTC 3 cut(s) 107, 220, 461
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 134, 435
PvuI CGATCG 1 cut(s) 315
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 2 cut(s) 393, 567
Sau3AI GATC 5 cut(s) 79, 154, 231, 297, 312
SchI GAGTC 3 cut(s) 107, 220, 461
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 209
Sse9I AATT 2 cut(s) 462, 517
SsiI CCGC 1 cut(s) 393
SspMI CTAG 2 cut(s) 110, 579
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 596
TaiI ACGT 1 cut(s) 73
TaqI TCGA 5 cut(s) 31, 75, 153, 198, 300
TasI AATT 2 cut(s) 462, 517
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 1 cut(s) 190
TscAI CASTG 2 cut(s) 176, 292
TseI GCWGC 1 cut(s) 566
TspDTI ATGAA 3 cut(s) 506, 563, 569
TspRI CASTG 2 cut(s) 176, 292
XapI RAATTY 1 cut(s) 517
XbaI TCTAGA 1 cut(s) 109
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 2 cut(s) 110, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.