MD09G1156600.v1.1

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000297
Physical Location & Seq
Reverse (-)
12467254 .. 12469948
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1156600.v1.1.491

Sequence Viewer

Length: 696 bp
ATGGATGAGGATTATTCAAGTGATGAAGGGCAAGCAATAGCGCCATCTTTGGTTGATCTGTGCATTAACACAGCAATAGATAATTTAAGGCGCCTTGGGGATGTTGGTGAAACCGATTCTCATCTTCTCAAGAGAATTCTACCACATTGTACGGTGGACCAGTTGATGCATGTAGAGAAGAGTACCAAAGGTAGAGATTTGACTCCAATTACTGATAAGTTGTGGAAGAAATTCTATGAAAAGGAATTTGGTACTAAGAGGGTGAATGAGGTGATTGAAAGGATGAAGCAAAAGAAAGTTGCGTTCAGGTGGATACAATTGTATGAGGCAAAGTTAAAGGAAGTTGATATGGCTGAAAATTTAATGGCTGACAAGTTGAAGAGTCGATATCAAGAGGCAAATGCTCGAAAACAAAGTCGGCAAGTTCAAATTTGCACAAAGGTTCCACCATCAAGCAATAAAAGAAGCTGGGGCAATGGGCCTGGCTACAATGTTACTGGAAAGAGCAACTTGATGAAGAAGGCGAAACTAGATTTTCTGAAAAGTAATGAGGTGAAAAATCTGGCAGCAATGAAGAGAAATGCACTCCAGAAGAGTTACAGTGCTCCTCCCGTGAAGAGGCCAGATGCGTTTTCTGGGAAAGCTTCAGCTTCAAGTTCTAAACCAATCAGGCCCCCAAAGCGCCTCCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

232

Amino Acids

26.25

Weight (kDa)

9.82

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 33 - 141 2.2e-23 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 90
AcsI RAATTY 5 cut(s) 135, 230, 245, 358, 429
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 1 cut(s) 91
AfaI GTAC 3 cut(s) 151, 184, 253
AfiI CCNNNNNNNGG 1 cut(s) 618
AgsI TTSAA 5 cut(s) 18, 278, 379, 428, 654
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 3 cut(s) 468, 644, 650
AluI AGCT 3 cut(s) 468, 644, 650
Alw21I GWGCWC 1 cut(s) 607
AoxI GGCC 3 cut(s) 479, 620, 671
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 5 cut(s) 135, 230, 245, 358, 429
ArsI GACNNNNNNTTYG 2 cut(s) 400, 432
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 3 cut(s) 43, 93, 684
AspS9I GGNCC 3 cut(s) 157, 479, 672
AsuHPI GGTGA 4 cut(s) 119, 274, 283, 565
AvaII GGWCC 1 cut(s) 157
BaeI ACNNNNGTAYC 2 cut(s) 305, 338
BanI GGYRCC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 607
BbvI GCAGC 1 cut(s) 578
BccI CCATC 2 cut(s) 52, 457
BciT130I CCWGG 1 cut(s) 483
BciVI GTATCC 1 cut(s) 306
BfaI CTAG 1 cut(s) 530
BfoI RGCGCY 3 cut(s) 44, 94, 685
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 3 cut(s) 157, 479, 672
BmiI GGNNCC 3 cut(s) 92, 444, 674
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 2 cut(s) 156, 616
BpmI CTGGAG 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 618
Bse1I ACTGG 2 cut(s) 160, 502
Bse3DI GCAATG 2 cut(s) 481, 576
Bse8I GATNNNNATC 1 cut(s) 120
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 3 cut(s) 10, 106, 288
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 618
BseMI GCAATG 2 cut(s) 481, 576
BseNI ACTGG 2 cut(s) 160, 502
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 1 cut(s) 578
BseYI CCCAGC 1 cut(s) 468
BshFI GGCC 3 cut(s) 481, 622, 673
BshNI GGYRCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 607
BslI CCNNNNNNNGG 1 cut(s) 618
BsnI GGCC 3 cut(s) 481, 622, 673
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 3 cut(s) 481, 622, 673
BspLI GGNNCC 3 cut(s) 92, 444, 674
BspT107I GGYRCC 1 cut(s) 90
BsrDI GCAATG 2 cut(s) 481, 576
BsrI ACTGG 2 cut(s) 160, 502
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 154, 602
Bst6I CTCTTC 5 cut(s) 173, 374, 569, 587, 611
BstACI GRCGYC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 10, 106, 288
BstH2I RGCGCY 3 cut(s) 44, 94, 685
BstHHI GCGC 3 cut(s) 43, 93, 684
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 679
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 481
BstV1I GCAGC 1 cut(s) 578
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 3 cut(s) 481, 622, 673
BtsCI GGATG 3 cut(s) 10, 106, 288
BtsIMutI CAGTG 1 cut(s) 607
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 3 cut(s) 43, 93, 684
Cfr13I GGNCC 3 cut(s) 157, 479, 672
Csp6I GTAC 3 cut(s) 150, 183, 252
CviAII CATG 1 cut(s) 170
CviJI RGCY 9 cut(s) 353, 368, 468, 481, 486, 622, 644, 650, 673
CviKI_1 RGCY 9 cut(s) 353, 368, 468, 481, 486, 622, 644, 650, 673
CviQI GTAC 3 cut(s) 150, 183, 252
DdeI CTNAG 1 cut(s) 255
DinI GGCGCC 1 cut(s) 92
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 5 cut(s) 173, 374, 569, 587, 611
EarI CTCTTC 5 cut(s) 173, 374, 569, 587, 611
Eco130I CCWWGG 1 cut(s) 94
Eco32I GATATC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 672
EcoRI GAATTC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 481
EcoRV GATATC 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 171
EgeI GGCGCC 1 cut(s) 92
EheI GGCGCC 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 173
FaiI YATR 4 cut(s) 171, 237, 324, 350
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FatI CATG 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 3 cut(s) 17, 113, 295
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 1 cut(s) 530
GlaI GCGC 3 cut(s) 42, 92, 683
GluI GCNGC 1 cut(s) 567
GsaI CCCAGC 1 cut(s) 472
GsuI CTGGAG 1 cut(s) 572
HaeII RGCGCY 3 cut(s) 44, 94, 685
HaeIII GGCC 3 cut(s) 481, 622, 673
HhaI GCGC 3 cut(s) 43, 93, 684
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 1 cut(s) 173
Hin6I GCGC 3 cut(s) 41, 91, 682
HinP1I GCGC 3 cut(s) 41, 91, 682
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 3 cut(s) 116, 202, 382
HphI GGTGA 4 cut(s) 119, 274, 283, 565
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 540, 695
Hpy188III TCNNGA 3 cut(s) 130, 392, 589
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 20, 514
HpyCH4III ACNGT 2 cut(s) 154, 602
HpyCH4V TGCA 4 cut(s) 63, 169, 435, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 679
HpyF3I CTNAG 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 1 cut(s) 173
HspAI GCGC 3 cut(s) 41, 91, 682
KasI GGCGCC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 1 cut(s) 578
LweI GCATC 2 cut(s) 156, 616
MaeI CTAG 1 cut(s) 530
MaeIII GTNAC 2 cut(s) 493, 596
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 8 cut(s) 116, 190, 238, 391, 529, 586, 604, 628
MfeI CAATTG 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 607
MluCI AATT 8 cut(s) 82, 135, 207, 230, 245, 317, 358, 429
Mly113I GGCGCC 1 cut(s) 91
MlyI GAGTC 2 cut(s) 196, 391
MnlI CCTC 8 cut(s) 252, 262, 319, 388, 544, 612, 618, 695
Mph1103I ATGCAT 1 cut(s) 171
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 4 cut(s) 66, 86, 335, 362
MspR9I CCNGG 1 cut(s) 483
MunI CAATTG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 679
NarI GGCGCC 1 cut(s) 91
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 3 cut(s) 92, 444, 674
NsiI ATGCAT 1 cut(s) 171
NspI RCATGY 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 2 cut(s) 196, 390
PluTI GGCGCC 1 cut(s) 94
PpsI GAGTC 2 cut(s) 196, 390
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 468
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 3 cut(s) 92, 444, 674
PspPI GGNCC 3 cut(s) 157, 479, 672
RsaI GTAC 3 cut(s) 151, 184, 253
RsaNI GTAC 3 cut(s) 150, 183, 252
SaqAI TTAA 4 cut(s) 66, 86, 335, 362
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 3 cut(s) 157, 479, 672
SchI GAGTC 2 cut(s) 196, 391
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 1 cut(s) 607
SetI ASST 8 cut(s) 193, 273, 311, 444, 470, 555, 646, 652
SfaNI GCATC 2 cut(s) 156, 616
SfoI GGCGCC 1 cut(s) 92
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 8 cut(s) 82, 135, 207, 230, 245, 317, 358, 429
SspDI GGCGCC 1 cut(s) 90
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 2 cut(s) 154, 602
TaqI TCGA 2 cut(s) 385, 406
TasI AATT 8 cut(s) 82, 135, 207, 230, 245, 317, 358, 429
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 4 cut(s) 66, 86, 335, 362
Tru9I TTAA 4 cut(s) 66, 86, 335, 362
TscAI CASTG 1 cut(s) 607
TseI GCWGC 1 cut(s) 566
TspDTI ATGAA 5 cut(s) 39, 252, 299, 530, 587
TspRI CASTG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 5 cut(s) 135, 230, 245, 358, 429
XceI RCATGY 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 530
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.