RchiOBHm_Chr2g0150701

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000297
Physical Location & Seq
Forward (+)
68361361 .. 68361856
496 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51995

Sequence Viewer

Length: 273 bp
ATGTATATCGAGAAGAGTACGAAAGGTAGGGATTTGAGTCCAGTAACCGATAAGTTGTGGAAGAAATTCTATGAGAAGGAGTTTGGTATTGAGAGGACTAATCTGGTGATCGAAAGGATGAGGAAAAAGAAAGTCAATTTCAGATGGTTGCAATTGTATCAGGCCAAATTGAGGGAAGTGGATGAGGCTGAAAATGAAGCGGCTGACTGGTTGAAGAATTCAATTCCCTCATCATATTCTAGCAGAGCAAGGATCATTTTGTTAATTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

90

Amino Acids

10.81

Weight (kDa)

9.59

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 3 - 79 4.5e-10 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 2 cut(s) 65, 217
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 214, 222
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 65, 217
Asp700I GAANNNNTTC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 118
BccI CCATC 1 cut(s) 138
BfaI CTAG 1 cut(s) 240
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 41, 212
BseGI GGATG 2 cut(s) 123, 187
BseLI CCNNNNNNNGG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 41, 212
BshFI GGCC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 171
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 108, 252
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 260
BsrI ACTGG 2 cut(s) 41, 212
BssMI GATC 2 cut(s) 108, 252
Bst6I CTCTTC 1 cut(s) 8
BstF5I GGATG 2 cut(s) 123, 187
BstKTI GATC 2 cut(s) 111, 255
BstMBI GATC 2 cut(s) 108, 252
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 123, 187
Csp6I GTAC 1 cut(s) 18
CviJI RGCY 3 cut(s) 164, 188, 203
CviKI_1 RGCY 3 cut(s) 164, 188, 203
CviQI GTAC 1 cut(s) 18
DpnI GATC 2 cut(s) 110, 254
DpnII GATC 2 cut(s) 108, 252
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 217
FaiI YATR 3 cut(s) 6, 72, 235
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 2 cut(s) 130, 194
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 164
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 108, 252
LpnPI CCDG 4 cut(s) 54, 89, 146, 193
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 110, 254
MboI GATC 2 cut(s) 108, 252
MboII GAAGA 3 cut(s) 25, 73, 226
MfeI CAATTG 1 cut(s) 152
MluCI AATT 7 cut(s) 65, 136, 152, 167, 217, 222, 264
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 5 cut(s) 87, 114, 165, 178, 238
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 1 cut(s) 263
MunI CAATTG 1 cut(s) 152
NdeII GATC 2 cut(s) 108, 252
PdmI GAANNNNTTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 108, 252
SchI GAGTC 1 cut(s) 46
SetI ASST 1 cut(s) 28
SgeI CNNG 7 cut(s) 22, 53, 116, 173, 220, 252, 261
Sse9I AATT 7 cut(s) 65, 136, 152, 167, 217, 222, 264
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 240
TaqI TCGA 2 cut(s) 9, 111
TasI AATT 7 cut(s) 65, 136, 152, 167, 217, 222, 264
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 210
XapI RAATTY 2 cut(s) 65, 217
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.