Rorug02G0422100

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000297
Physical Location & Seq
Reverse (-)
54235653 .. 54235880
228 bp
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UTR
Exon/CDS
Intron
Rorug02G0422100.1

Sequence Viewer

Length: 228 bp
ATGCGGTGGCGTTGGTTTCATCAGGAAAATTACCGAGTTGAGATGGACTCCATTGACGAAAGGGTGGTTTTTACCACAATGAAGGAGACTGCAAAATGGTTAGTAGATAATGAAGATGCAGAGGCAGATGACTTTGATGCCAAGATGAAGGAAGTGAAAGAGGTACTGGATTCAAGCAAAGTTCACTATTCCCCTACAACTTCTAGTCAATCCCATGATGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

75

Amino Acids

9.0

Weight (kDa)

4.68

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 80
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 204
BmsI GCATC 2 cut(s) 106, 127
BplI GAGNNNNNCTC 2 cut(s) 32, 64
Bse1I ACTGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 80
BspACI CCGC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 164
CviAII CATG 1 cut(s) 215
CviQI GTAC 1 cut(s) 164
FaeI CATG 1 cut(s) 218
FaiI YATR 1 cut(s) 216
FatI CATG 1 cut(s) 214
FspBI CTAG 1 cut(s) 204
Hin1II CATG 1 cut(s) 218
HinfI GANTC 2 cut(s) 47, 170
Hpy166II GTNNAC 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 76, 142
HpyCH4V TGCA 2 cut(s) 92, 119
Hsp92II CATG 1 cut(s) 218
LpnPI CCDG 2 cut(s) 8, 152
LweI GCATC 2 cut(s) 106, 127
MaeI CTAG 1 cut(s) 204
MboII GAAGA 1 cut(s) 125
MluCI AATT 1 cut(s) 28
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 2 cut(s) 115, 154
NlaIII CATG 1 cut(s) 218
PfeI GAWTC 1 cut(s) 170
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SchI GAGTC 1 cut(s) 41
SetI ASST 1 cut(s) 165
SfaNI GCATC 2 cut(s) 106, 127
SgeI CNNG 6 cut(s) 35, 47, 154, 179, 186, 216
Sse9I AATT 1 cut(s) 28
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 204
TasI AATT 1 cut(s) 28
TfiI GAWTC 1 cut(s) 170
TspDTI ATGAA 4 cut(s) 8, 95, 126, 161
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.