Rmu_sc0004556.1_g000009

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004556.1
OG0000297
Physical Location & Seq
Forward (+)
40221 .. 40883
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004556.1_g000009.1.cds

Sequence Viewer

Length: 663 bp
atggaaaccacagacctcactcacttcactcgaaaaacaaccctcacaatggagaagggaaggttgatacgtctcgatgatggttgggtctccgttgcaatagacaatctggactcttttggggatgttgggtacctggacttcaagtttctcgatcaggtcttaccccactgctccaaagaccagttgattcacatcgaaaagagcacaaaaggcacagacctaactccgatcaccgataagctttggaataagttctttgagagagacttcggtagcaaagccactgatgaggtgatcgagaagatgaagatcaggaaagtgagttccaagtggtcggagttgtatcaggccaagtcgaaaagggtggaagaggctgagaaagaagtcggtgaaaggctgaagaagctgtatgagaaagaagccgcccgtaaacaaaaccggcaagtgagggttttggacaaggctcctccttcttcgtcaggcaataaaaggattggccccaacaaagggagcaaactgatgaacaaagtgaggaaagagtatctgaattctctggaggtgagaaatcttgaagctatgaagatgaagagaactgctgccaagtattctagtatgagcaaaaagccaagaacgactattcaagctatgaacgtcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

220

Amino Acids

25.44

Weight (kDa)

9.76

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 1 cut(s) 426
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 49, 509, 510
AgsI TTSAA 3 cut(s) 145, 575, 644
AjnI CCWGG 1 cut(s) 135
AloI GAACNNNNNNTCC 2 cut(s) 310, 342
AluBI AGCT 4 cut(s) 244, 409, 578, 647
AluI AGCT 4 cut(s) 244, 409, 578, 647
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 3 cut(s) 77, 94, 261
AoxI GGCC 2 cut(s) 351, 499
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 254
Asp718I GGTACC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 4 cut(s) 226, 307, 404, 574
BanI GGYRCC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 586
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 77, 94, 261
BfaI CTAG 1 cut(s) 612
BisI GCNGC 2 cut(s) 426, 600
BlsI GCNGC 2 cut(s) 427, 601
Bme1390I CCNGG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 3 cut(s) 134, 468, 502
BmrFI CCNGG 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 578
BsaBI GATNNNNATC 2 cut(s) 194, 311
BsaI GGTCTC 1 cut(s) 94
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 509, 510
Bse118I RCCGGY 1 cut(s) 441
Bse1I ACTGG 1 cut(s) 184
Bse8I GATNNNNATC 2 cut(s) 194, 311
BseBI CCWGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 2 cut(s) 194, 311
BseLI CCNNNNNNNGG 3 cut(s) 49, 509, 510
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 459
BseXI GCAGC 1 cut(s) 586
BshFI GGCC 2 cut(s) 353, 501
BshNI GGYRCC 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 442
BslI CCNNNNNNNGG 3 cut(s) 49, 509, 510
BsmAI GTCTC 3 cut(s) 77, 94, 261
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 2 cut(s) 353, 501
Bso31I GGTCTC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 4 cut(s) 154, 231, 297, 312
BspACI CCGC 1 cut(s) 426
BspANI GGCC 2 cut(s) 353, 501
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 134, 468, 502
BspT107I GGYRCC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 441
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 441
BssMI GATC 4 cut(s) 154, 231, 297, 312
Bst2UI CCWGG 1 cut(s) 137
Bst6I CTCTTC 2 cut(s) 366, 584
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 4 cut(s) 157, 234, 300, 315
BstMAI GTCTC 3 cut(s) 77, 94, 261
BstMBI GATC 4 cut(s) 154, 231, 297, 312
BstMWI GCNNNNNNNGC 2 cut(s) 213, 406
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 586
BsuRI GGCC 2 cut(s) 353, 501
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 169, 285
Cfr10I RCCGGY 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 1 cut(s) 133
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 378
DpnI GATC 4 cut(s) 156, 233, 299, 314
DpnII GATC 4 cut(s) 154, 231, 297, 312
Eam1104I CTCTTC 2 cut(s) 366, 584
EarI CTCTTC 2 cut(s) 366, 584
Eco31I GGTCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 4 cut(s) 414, 581, 617, 650
Fnu4HI GCNGC 2 cut(s) 426, 600
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 426, 600
FspBI CTAG 1 cut(s) 612
GluI GCNGC 2 cut(s) 426, 600
GsuI CTGGAG 1 cut(s) 578
HaeIII GGCC 2 cut(s) 353, 501
HapII CCGG 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 2 cut(s) 113, 190
HpaII CCGG 1 cut(s) 442
HphI GGTGA 4 cut(s) 226, 307, 404, 574
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 3 cut(s) 231, 340, 549
Hpy188III TCNNGA 7 cut(s) 74, 110, 152, 301, 316, 557, 572
Hpy8I GTNNAC 1 cut(s) 434
HpyAV CCTTC 3 cut(s) 49, 54, 483
HpyCH4IV ACGT 2 cut(s) 70, 654
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 406
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 2 cut(s) 70, 654
KpnI GGTACC 1 cut(s) 136
Kzo9I GATC 4 cut(s) 154, 231, 297, 312
LmnI GCTCC 3 cut(s) 179, 472, 513
Lsp1109I GCAGC 1 cut(s) 586
MaeI CTAG 1 cut(s) 612
MaeII ACGT 2 cut(s) 70, 654
MalI GATC 4 cut(s) 156, 233, 299, 314
MboI GATC 4 cut(s) 154, 231, 297, 312
MboII GAAGA 7 cut(s) 316, 322, 383, 415, 468, 595, 601
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 1 cut(s) 550
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 8 cut(s) 26, 53, 286, 367, 444, 480, 528, 553
MroXI GAANNNNTTC 1 cut(s) 254
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 213, 406
NdeII GATC 4 cut(s) 154, 231, 297, 312
NlaIV GGNNCC 3 cut(s) 134, 468, 502
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 427, 601
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 3 cut(s) 134, 468, 502
PspPI GGNCC 1 cut(s) 500
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 2 cut(s) 426, 600
Sau3AI GATC 4 cut(s) 154, 231, 297, 312
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 209
Sse9I AATT 1 cut(s) 550
SsiI CCGC 1 cut(s) 426
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 135
TaiI ACGT 2 cut(s) 73, 657
TaqI TCGA 6 cut(s) 31, 75, 153, 198, 300, 359
TasI AATT 1 cut(s) 550
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 1 cut(s) 190
TscAI CASTG 2 cut(s) 176, 292
TseI GCWGC 1 cut(s) 599
TspDTI ATGAA 4 cut(s) 323, 539, 596, 602
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 2 cut(s) 176, 292
XapI RAATTY 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.