Rorug01G0402700

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000297
Physical Location & Seq
Forward (+)
51016614 .. 51018422
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0402700.1

Sequence Viewer

Length: 474 bp
ATGGTTTCTAGGGAGCACAAGAGAGCAGCACTTTATGAGAAGCTGCAACTTCTTCGTTCCATTACTAACTCTCATGCTCTAAACCAAACCTCAATCATAGTAGACGCATCAAAGTATATTGAAGAGCTAAAACAGAAAGTGGAAAAACTCAATCAAGACATTGCAAATGCAACTTCAAGTCATGACCAAAATCAATTGCCAGTGCAGGTTACAGTGGAAACCCTAGAAAAGGGGTTTCTGATAAATGTGTATTCGGAAAAGAGCTGCCCCGGTTTGCTTGTGTCTGTACTGGAAGCCTTCGAAGAGTTGGGTCTAAATGTGCTTGAAGCTAGGGTTTCCTGTGCAGAAAGTTTCAGACTGCAGGCAGTTGGAGGAGAAAATGAAGAAGAAGGCGAAGGGATTGATGCTCACGCAGTCAAACAGGCAGTGGCTGTGGCTATTAAGAGCTGGAGTGAAAGTACCGAACAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

157

Amino Acids

17.34

Weight (kDa)

4.91

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 69 - 148 6.9e-25 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 102
AfaI GTAC 2 cut(s) 288, 460
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 3 cut(s) 122, 177, 326
AluBI AGCT 5 cut(s) 43, 127, 264, 329, 447
AluI AGCT 5 cut(s) 43, 127, 264, 329, 447
Alw21I GWGCWC 1 cut(s) 18
AlwNI CAGNNNCTG 1 cut(s) 431
ApeKI GCWGC 3 cut(s) 26, 43, 264
AsuC2I CCSGG 1 cut(s) 270
AsuII TTCGAA 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 30, 38, 251
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BcnI CCSGG 1 cut(s) 270
BfaI CTAG 3 cut(s) 9, 224, 330
BfmI CTRYAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 3 cut(s) 27, 44, 265
BlsI GCNGC 3 cut(s) 28, 45, 266
Bme1390I CCNGG 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 116, 394
BpmI CTGGAG 1 cut(s) 469
Bpu14I TTCGAA 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 200, 294
Bse3DI GCAATG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 200, 294
BseRI GAGGAG 1 cut(s) 387
BseXI GCAGC 3 cut(s) 30, 38, 251
BsgI GTGCAG 2 cut(s) 224, 363
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 229
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 18
BspHI TCATGA 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 2 cut(s) 200, 294
BssECI CCNNGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 117, 297
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 363
BstENI CCTNNNNNAGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 359
BstV1I GCAGC 3 cut(s) 30, 38, 251
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 3 cut(s) 207, 219, 432
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 363
CaiI CAGNNNCTG 1 cut(s) 431
CciI TCATGA 1 cut(s) 181
CseI GACGC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 287, 459
CviAII CATG 2 cut(s) 74, 182
CviJI RGCY 8 cut(s) 43, 127, 264, 296, 329, 431, 437, 447
CviKI_1 RGCY 8 cut(s) 43, 127, 264, 296, 329, 431, 437, 447
CviQI GTAC 2 cut(s) 287, 459
Eam1104I CTCTTC 2 cut(s) 117, 297
EarI CTCTTC 2 cut(s) 117, 297
EcoNI CCTNNNNNAGG 1 cut(s) 227
FaeI CATG 2 cut(s) 77, 185
FaiI YATR 5 cut(s) 36, 75, 98, 117, 183
FatI CATG 2 cut(s) 73, 181
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 27, 44, 265
Fsp4HI GCNGC 3 cut(s) 27, 44, 265
FspBI CTAG 3 cut(s) 9, 224, 330
GluI GCNGC 3 cut(s) 27, 44, 265
GsuI CTGGAG 1 cut(s) 469
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 77, 185
HpaII CCGG 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 240, 256, 356
Hpy188III TCNNGA 2 cut(s) 155, 182
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 307, 383, 389
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 6 cut(s) 46, 164, 170, 205, 344, 361
Hsp92II CATG 2 cut(s) 77, 185
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 8 cut(s) 191, 213, 275, 283, 347, 352, 407, 433
Lsp1109I GCAGC 3 cut(s) 30, 38, 251
LweI GCATC 2 cut(s) 116, 394
MaeI CTAG 3 cut(s) 9, 224, 330
MaeIII GTNAC 1 cut(s) 208
MboII GAAGA 5 cut(s) 44, 134, 314, 395, 398
MfeI CAATTG 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 2 cut(s) 100, 365
MseI TTAA 1 cut(s) 441
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 270
MunI CAATTG 1 cut(s) 194
NciI CCSGG 1 cut(s) 270
NlaIII CATG 2 cut(s) 77, 185
NspV TTCGAA 1 cut(s) 300
PagI TCATGA 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 117
PkrI GCNGC 3 cut(s) 28, 45, 266
PstI CTGCAG 1 cut(s) 363
PstNI CAGNNNCTG 1 cut(s) 431
RsaI GTAC 2 cut(s) 288, 460
RsaNI GTAC 2 cut(s) 287, 459
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 3 cut(s) 27, 44, 265
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 18
SetI ASST 7 cut(s) 45, 92, 129, 210, 266, 331, 449
SfaNI GCATC 2 cut(s) 116, 394
SfcI CTRYAG 1 cut(s) 359
SfuI TTCGAA 1 cut(s) 300
Sse9I AATT 1 cut(s) 194
SspMI CTAG 3 cut(s) 9, 224, 330
StyD4I CCNGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 300
TasI AATT 1 cut(s) 194
TatI WGTACW 1 cut(s) 286
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 3 cut(s) 207, 219, 432
TseI GCWGC 3 cut(s) 26, 43, 264
TspDTI ATGAA 1 cut(s) 396
TspRI CASTG 3 cut(s) 207, 219, 432
XagI CCTNNNNNAGG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 3 cut(s) 9, 224, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.