Rmu_sc0002483.1_g000004

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002483.1
OG0000297
Physical Location & Seq
Reverse (-)
44615 .. 44872
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002483.1_g000004.1.cds

Sequence Viewer

Length: 258 bp
atggaaaccacagagctcactcacttcactcacaaaataaccatcacaatggagaagggaaggttaatccgtctcaatgaccactgggtgcccattgttatagacaatcttgattcttttggggatgttgggtacctagacgtcgagtttctcgatcaggtcttgccacactgctccaaagaccagttgattcacatcgagaagagcacaaaagttgtcgacctgactccgatcaccaataagctgtggattgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

85

Amino Acids

9.87

Weight (kDa)

5.35

Isoelectric Point (pI)

24.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 2 cut(s) 88, 132
AccI GTMKAC 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 141
AdeI CACNNNGTG 1 cut(s) 88
AfaI GTAC 1 cut(s) 134
AluBI AGCT 2 cut(s) 16, 244
AluI AGCT 2 cut(s) 16, 244
Alw21I GWGCWC 2 cut(s) 18, 209
Alw26I GTCTC 1 cut(s) 77
Asp718I GGTACC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 93
BanI GGYRCC 2 cut(s) 88, 132
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 18, 209
BccI CCATC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 137, 256
BmiI GGNNCC 2 cut(s) 90, 134
BmrI ACTGGG 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 89, 184
Bse8I GATNNNNATC 1 cut(s) 194
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 194
BseNI ACTGG 2 cut(s) 89, 184
BseSI GKGCMC 1 cut(s) 93
BshNI GGYRCC 2 cut(s) 88, 132
BsiHKAI GWGCWC 2 cut(s) 18, 209
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 3 cut(s) 18, 93, 209
Bsp143I GATC 2 cut(s) 154, 231
BspLI GGNNCC 2 cut(s) 90, 134
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 2 cut(s) 88, 132
BsrI ACTGG 2 cut(s) 89, 184
BssMI GATC 2 cut(s) 154, 231
BssNI GRCGYC 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 141
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 2 cut(s) 157, 234
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 154, 231
BstSLI GKGCMC 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 82, 169
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 2 cut(s) 16, 244
CviKI_1 RGCY 2 cut(s) 16, 244
CviQI GTAC 1 cut(s) 133
DpnI GATC 2 cut(s) 156, 233
DpnII GATC 2 cut(s) 154, 231
DraIII CACNNNGTG 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 1 cut(s) 101
FblI GTMKAC 1 cut(s) 219
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 18
FspBI CTAG 2 cut(s) 137, 256
Hin1I GRCGYC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 3 cut(s) 113, 190, 226
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 3 cut(s) 110, 152, 199
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 49, 54
HpyCH4IV ACGT 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
KpnI GGTACC 1 cut(s) 136
Kzo9I GATC 2 cut(s) 154, 231
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 4 cut(s) 70, 143, 197, 236
MaeI CTAG 2 cut(s) 137, 256
MaeII ACGT 1 cut(s) 141
MalI GATC 2 cut(s) 156, 233
MboI GATC 2 cut(s) 154, 231
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 3 cut(s) 18, 93, 209
MlyI GAGTC 1 cut(s) 220
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 47
NdeII GATC 2 cut(s) 154, 231
NlaIV GGNNCC 2 cut(s) 90, 134
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 2 cut(s) 113, 190
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 90, 134
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 18
SalI GTCGAC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 2 cut(s) 154, 231
SchI GAGTC 1 cut(s) 220
SduI GDGCHC 3 cut(s) 18, 93, 209
SetI ASST 7 cut(s) 18, 65, 138, 144, 162, 225, 246
SmiMI CAYNNNNRTG 1 cut(s) 47
SspMI CTAG 2 cut(s) 137, 256
SstI GAGCTC 1 cut(s) 18
TaiI ACGT 1 cut(s) 144
TaqI TCGA 4 cut(s) 144, 153, 198, 219
TfiI GAWTC 2 cut(s) 113, 190
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 2 cut(s) 89, 176
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 2 cut(s) 89, 176
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 2 cut(s) 137, 256
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.