Rmu_sc0000367.1_g000008

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
OG0000297
Physical Location & Seq
Reverse (-)
44083 .. 44694
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000367.1_g000008.1.cds

Sequence Viewer

Length: 612 bp
atggaagaggtaaagttgatatgtcttgatgagcgttgggtctccattgcaatagacaatcgagacgatcttggggatgttgggtccctcgacttcaagtttctggagcaggtcttaccacactgctccaaagaccagttggttcacatcgagaagagcaccaaaggtaaagatctgagtcccatcaccgataagctgtggaagaagttcttcgagagagatttcggtcttaaagccacagatgaggtgatcgataagatgaagatcaagaaagtgagtttcaaatggtcggagttgtaccacgacaagttgaagagaatggaagaggctgagaaagaagcgggtgaaaggttgaagaatctgtatcagaaagaaagcgcccggaaacgaagccggcaagttagggttttggataaggttccaccttcttcttcaagcaataaaagaagtggatccaacgcagggagcaaactgatgaagaaagtgacgaaagagtatctgaattgtttggaggtgaaaaatcttgaagctgtgaagatgaagagaactgccaagtgttctggtctcatcaaaaagccaagaacgactcttcaagctactaacgtcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

203

Amino Acids

23.47

Weight (kDa)

9.57

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AciI CCGC 1 cut(s) 341
AclWI GGATC 2 cut(s) 447, 460
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 7 cut(s) 97, 283, 313, 355, 435, 527, 593
AluBI AGCT 3 cut(s) 196, 530, 596
AluI AGCT 3 cut(s) 196, 530, 596
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 3 cut(s) 46, 57, 569
AlwI GGATC 2 cut(s) 447, 460
Asp700I GAANNNNTTC 2 cut(s) 206, 209
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 4 cut(s) 178, 259, 356, 526
AvaII GGWCC 1 cut(s) 84
BamHI GGATCC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 161
BccI CCATC 1 cut(s) 191
BcnI CCSGG 1 cut(s) 382
BcoDI GTCTC 3 cut(s) 46, 57, 569
BfoI RGCGCY 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 100
BglII AGATCT 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 382
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 4 cut(s) 85, 86, 420, 454
BmrFI CCNGG 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 382
Bsa29I ATCGAT 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 263
BsaI GGTCTC 2 cut(s) 46, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 263
BseCI ATCGAT 1 cut(s) 252
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 167, 321
BseNI ACTGG 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 2 cut(s) 382, 394
BslFI GGGAC 2 cut(s) 70, 165
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 3 cut(s) 46, 57, 569
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 70, 165
Bso31I GGTCTC 2 cut(s) 46, 569
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 5 cut(s) 67, 172, 249, 264, 452
BspACI CCGC 1 cut(s) 341
BspCNI CTCAG 2 cut(s) 168, 322
BspDI ATCGAT 1 cut(s) 252
BspLI GGNNCC 4 cut(s) 85, 86, 420, 454
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 447, 460
BspQI GCTCTTC 1 cut(s) 149
BspTNI GGTCTC 2 cut(s) 46, 569
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 393
BssMI GATC 5 cut(s) 67, 172, 249, 264, 452
Bst6I CTCTTC 5 cut(s) 149, 308, 318, 536, 594
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 2 cut(s) 176, 330
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 5 cut(s) 70, 175, 252, 267, 455
BstMAI GTCTC 3 cut(s) 46, 57, 569
BstMBI GATC 5 cut(s) 67, 172, 249, 264, 452
BstSCI CCNGG 1 cut(s) 380
BstX2I RGATCY 2 cut(s) 172, 452
BstYI RGATCY 2 cut(s) 172, 452
Bsu15I ATCGAT 1 cut(s) 252
BsuTUI ATCGAT 1 cut(s) 252
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 395
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 84
ClaI ATCGAT 1 cut(s) 252
Csp6I GTAC 1 cut(s) 298
CviJI RGCY 7 cut(s) 196, 236, 329, 393, 530, 577, 596
CviKI_1 RGCY 7 cut(s) 196, 236, 329, 393, 530, 577, 596
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 2 cut(s) 176, 330
DpnI GATC 5 cut(s) 69, 174, 251, 266, 454
DpnII GATC 5 cut(s) 67, 172, 249, 264, 452
Eam1104I CTCTTC 5 cut(s) 149, 308, 318, 536, 594
EarI CTCTTC 5 cut(s) 149, 308, 318, 536, 594
Eco31I GGTCTC 2 cut(s) 46, 569
Eco47I GGWCC 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 57
FaiI YATR 1 cut(s) 22
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 2 cut(s) 70, 165
FauI CCCGC 1 cut(s) 334
FokI GGATG 1 cut(s) 89
GlaI GCGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 381
HapII CCGG 2 cut(s) 382, 394
HhaI GCGC 1 cut(s) 380
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HinfI GANTC 3 cut(s) 178, 358, 586
HpaII CCGG 2 cut(s) 382, 394
HphI GGTGA 4 cut(s) 178, 259, 356, 526
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 4 cut(s) 177, 292, 369, 501
Hpy188III TCNNGA 7 cut(s) 26, 62, 104, 151, 214, 268, 524
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 435
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 176, 330
HpySE526I ACGT 1 cut(s) 603
HspAI GCGC 1 cut(s) 378
KflI GGGWCCC 1 cut(s) 84
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Kzo9I GATC 5 cut(s) 67, 172, 249, 264, 452
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 3 cut(s) 106, 131, 465
LpnPI CCDG 7 cut(s) 89, 95, 149, 395, 407, 447, 546
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 1 cut(s) 484
MalI GATC 5 cut(s) 69, 174, 251, 266, 454
MboI GATC 5 cut(s) 67, 172, 249, 264, 452
MflI RGATCY 2 cut(s) 172, 452
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 1 cut(s) 502
MlyI GAGTC 2 cut(s) 187, 580
MmeI TCCRAC 2 cut(s) 270, 480
MnlI CCTC 4 cut(s) 98, 238, 319, 505
MroNI GCCGGC 1 cut(s) 393
MroXI GAANNNNTTC 2 cut(s) 206, 209
MseI TTAA 1 cut(s) 231
MspI CCGG 2 cut(s) 382, 394
MspR9I CCNGG 1 cut(s) 382
NaeI GCCGGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 382
NdeII GATC 5 cut(s) 67, 172, 249, 264, 452
NgoMIV GCCGGC 1 cut(s) 393
NlaIV GGNNCC 4 cut(s) 85, 86, 420, 454
NmuCI GTSAC 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 395
PdmI GAANNNNTTC 2 cut(s) 206, 209
PfeI GAWTC 1 cut(s) 358
PleI GAGTC 2 cut(s) 186, 580
PpsI GAGTC 2 cut(s) 186, 580
PpuMI RGGWCCY 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 84
PspN4I GGNNCC 4 cut(s) 85, 86, 420, 454
PspPI GGNCC 1 cut(s) 84
PspPPI RGGWCCY 1 cut(s) 84
PsuI RGATCY 2 cut(s) 172, 452
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 5 cut(s) 67, 172, 249, 264, 452
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 2 cut(s) 187, 580
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 1 cut(s) 161
SinI GGWCC 1 cut(s) 84
Sse9I AATT 1 cut(s) 502
SsiI CCGC 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 380
TaiI ACGT 1 cut(s) 606
TaqI TCGA 5 cut(s) 61, 90, 150, 213, 252
TaqII GACCGA 1 cut(s) 215
TasI AATT 1 cut(s) 502
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 484
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 3 cut(s) 275, 491, 554
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XmnI GAANNNNTTC 2 cut(s) 206, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.