FvH4_7g19430

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000297
Physical Location & Seq
Forward (+)
16032780 .. 16033845
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19430.t1

Sequence Viewer

Length: 594 bp
ATGGAGAAAGAAAAGTTGATCCGTCTCGATGAGGGCTGGGTCTCCGTCGCCATAAACAGTCTCGATTCTTTTGGCAACGTTAAGGGCTACGACTTCTGGTTTCTCGATCAGGTGTTGCCACACTGCAACAAAAATCAGTTGGCTCACATCGAGAACTCCACCAAAGGTGTCGACCTGACTCCGATCACCGACAAGCTGTGGAAGAACTTCTTCAAGAGAGACTTCGGTGACAGAGCTCTGGATGAGACAATGGAGAAGATGAAGATGAAGAAGGTGAGCTTCAGGTGGTCGGAGCTGTACCAAGCCAAGTCCAGGAGTTTGGAAAAAAAGGAGAAAGAAGTGGGTGAGAGGTTGAAGAAGATGTACGAGAAAGAAGATGCTCGGAAACAAAGCCGACAAGTGAAGGTTCTGGACAAGGTTCCTCCAAGCAATAAGAGAATTGGCGTCATCAACAAAGGGTTGAGCAAAGGGAGGAAAAGCAATCCAATTATGAACAAACTCAAGAAGCAGTATGAAAATAGTTTGGCGAAGAGGAATCTTGATTTTGTGAAGATGAAGAGAACTGCAGTTGCTGCCAGAGCTGTAAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

198

Amino Acids

23.04

Weight (kDa)

9.98

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 27 - 133 8.1e-21 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AclI AACGTT 1 cut(s) 78
AclWI GGATC 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 265
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 2 cut(s) 299, 365
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 2 cut(s) 214, 355
AjnI CCWGG 1 cut(s) 311
AluBI AGCT 5 cut(s) 196, 236, 279, 295, 581
AluI AGCT 5 cut(s) 196, 236, 279, 295, 581
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 5 cut(s) 29, 46, 65, 213, 239
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 572
ApeKI GCWGC 1 cut(s) 572
Asp700I GAANNNNTTC 2 cut(s) 206, 209
AsuHPI GGTGA 4 cut(s) 178, 239, 286, 356
BanII GRGCYC 1 cut(s) 238
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 559
BciT130I CCWGG 1 cut(s) 313
BcoDI GTCTC 5 cut(s) 29, 46, 65, 213, 239
BfmI CTRYAG 1 cut(s) 564
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme1390I CCNGG 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 559
BseYI CCCAGC 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 5 cut(s) 29, 46, 65, 213, 239
BsmBI CGTCTC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 3 cut(s) 18, 106, 183
BspLI GGNNCC 1 cut(s) 420
BspMAI CTGCAG 1 cut(s) 568
BspPI GGATC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 46
BssMI GATC 3 cut(s) 18, 106, 183
BssNI GRCGYC 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 524, 551
BstACI GRCGYC 1 cut(s) 444
BstAPI GCANNNNNTGC 1 cut(s) 572
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 3 cut(s) 21, 109, 186
BstMAI GTCTC 5 cut(s) 29, 46, 65, 213, 239
BstMBI GATC 3 cut(s) 18, 106, 183
BstMWI GCNNNNNNNGC 2 cut(s) 572, 578
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 319
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
CaiI CAGNNNCTG 1 cut(s) 572
CseI GACGC 1 cut(s) 433
Csp6I GTAC 2 cut(s) 298, 364
CviQI GTAC 2 cut(s) 298, 364
DpnI GATC 3 cut(s) 20, 108, 185
DpnII GATC 3 cut(s) 18, 106, 183
Eam1104I CTCTTC 2 cut(s) 524, 551
EarI CTCTTC 2 cut(s) 524, 551
Ecl136II GAGCTC 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 29
FaiI YATR 3 cut(s) 53, 491, 513
FalI AAGNNNNNCTT 6 cut(s) 194, 226, 206, 238, 263, 295
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 573
GluI GCNGC 1 cut(s) 573
GsaI CCCAGC 1 cut(s) 40
HgaI GACGC 1 cut(s) 433
Hin1I GRCGYC 1 cut(s) 444
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 65, 178, 535
HphI GGTGA 4 cut(s) 178, 239, 286, 356
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 183, 292, 384
Hpy188III TCNNGA 9 cut(s) 26, 62, 104, 151, 214, 239, 410, 502, 539
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 265, 397
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 126, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 578
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 444
Kzo9I GATC 3 cut(s) 18, 106, 183
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 1 cut(s) 559
LweI GCATC 1 cut(s) 367
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 227
MalI GATC 3 cut(s) 20, 108, 185
MboI GATC 3 cut(s) 18, 106, 183
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 3 cut(s) 438, 486, 589
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 5 cut(s) 25, 342, 432, 465, 525
MroXI GAANNNNTTC 2 cut(s) 206, 209
MseI TTAA 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 313
MwoI GCNNNNNNNGC 2 cut(s) 572, 578
NdeII GATC 3 cut(s) 18, 106, 183
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 227
PdmI GAANNNNTTC 2 cut(s) 206, 209
PfeI GAWTC 2 cut(s) 65, 535
PfoI TCCNGGA 1 cut(s) 311
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 238
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 420
PstI CTGCAG 1 cut(s) 568
PstNI CAGNNNCTG 1 cut(s) 572
RsaI GTAC 2 cut(s) 299, 365
RsaNI GTAC 2 cut(s) 298, 364
SacI GAGCTC 1 cut(s) 238
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 3 cut(s) 18, 106, 183
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 1 cut(s) 238
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 3 cut(s) 438, 486, 589
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 81
TaqI TCGA 5 cut(s) 27, 63, 105, 150, 171
TasI AATT 3 cut(s) 438, 486, 589
TfiI GAWTC 2 cut(s) 65, 535
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 5 cut(s) 275, 281, 506, 528, 569
TspGWI ACGGA 2 cut(s) 11, 34
TspRI CASTG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 2 cut(s) 206, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.