RchiOBHm_Chr1g0363261

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000297
Physical Location & Seq
Forward (+)
54722063 .. 54722677
615 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58803

Sequence Viewer

Length: 615 bp
ATGGAGAAGGGAAGGCTAATCCGTCTCAATGATCACTGGGTCTCCATTGCTATAGACAATCTTGATTCTTTTGGGGATGTTGGGTACCTAGATTTCAGGTTTCTCGATCAACTCTTACCCCACTGCTCCAAAGACCAGTTGATTCACATCGAGAAGTGCACAAAAGATACAGACCTGACTCCGATCACCGATAAGCTTTGGAAGAAGTTCTTTGAGAGAGACTTCGGTGGCAAAGCTACTGATGAGGTCATCGAGAAGATGAAGATCAAGAAAGTGAGCTTCAAGTGGTCGGAGTTGTACCAGGAAAAGTCCAAGAGACTGGAAAAGGCTGAGAAAGAAGTCGGTGTAAGGTTGAAGAAGCTGTACGAGAAAGAAGCCGCTCGGAAACAAAGCCGGCAGGTTAAGGTGTTGGACAAGGTTCCACCTTCTTCGTCAACCAACAACAGAAATGGCTCCAACAAAGATAGCAAACTGATGAGCAGATTGAGGAAACAACATCTGAATTGTCTGGAAATGAGAAATATTCAAGCTATGAAGATGAAGAGAACTGCTGCCAACTATTCTGGTCTCATCAAAAGGCCAAGAACGACTATTCGACCTATGAACATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

204

Amino Acids

23.98

Weight (kDa)

9.88

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 25 - 133 2.9e-22 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 388
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AccBSI CCGCTC 1 cut(s) 380
AciI CCGC 1 cut(s) 378
AfaI GTAC 3 cut(s) 86, 299, 365
AgsI TTSAA 3 cut(s) 283, 355, 527
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 5 cut(s) 196, 236, 279, 361, 530
AluI AGCT 5 cut(s) 196, 236, 279, 361, 530
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 5 cut(s) 29, 46, 213, 310, 572
Alw44I GTGCAC 1 cut(s) 157
AoxI GGCC 1 cut(s) 578
ApaLI GTGCAC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 551
Asp700I GAANNNNTTC 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 538
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 5 cut(s) 29, 46, 213, 310, 572
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 51
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 2 cut(s) 378, 552
BlsI GCNGC 2 cut(s) 379, 553
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 3 cut(s) 86, 420, 454
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BsaBI GATNNNNATC 2 cut(s) 146, 263
BsaI GGTCTC 2 cut(s) 46, 572
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 3 cut(s) 41, 136, 324
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 2 cut(s) 146, 263
BseBI CCWGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 2 cut(s) 146, 263
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 3 cut(s) 41, 136, 324
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 538
BshFI GGCC 1 cut(s) 580
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 394
BsmAI GTCTC 5 cut(s) 29, 46, 213, 310, 572
BsmBI CGTCTC 1 cut(s) 29
BsnI GGCC 1 cut(s) 580
Bso31I GGTCTC 2 cut(s) 46, 572
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 31, 106, 183, 264
BspACI CCGC 1 cut(s) 378
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 86, 420, 454
BspMI ACCTGC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 2 cut(s) 46, 572
BsrBI CCGCTC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 3 cut(s) 41, 136, 324
BssAI RCCGGY 1 cut(s) 393
BssMI GATC 4 cut(s) 31, 106, 183, 264
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 4 cut(s) 34, 109, 186, 267
BstMAI GTCTC 5 cut(s) 29, 46, 213, 310, 572
BstMBI GATC 4 cut(s) 31, 106, 183, 264
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 319
BsuRI GGCC 1 cut(s) 580
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 34, 121
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 393
Csp6I GTAC 3 cut(s) 85, 298, 364
CviQI GTAC 3 cut(s) 85, 298, 364
DdeI CTNAG 1 cut(s) 330
DpnI GATC 4 cut(s) 33, 108, 185, 266
DpnII GATC 4 cut(s) 31, 106, 183, 264
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco31I GGTCTC 2 cut(s) 46, 572
EcoRII CCWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 29
FaiI YATR 3 cut(s) 53, 533, 602
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 378, 552
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 378, 552
FspBI CTAG 1 cut(s) 89
GluI GCNGC 2 cut(s) 378, 552
HaeIII GGCC 1 cut(s) 580
HapII CCGG 1 cut(s) 394
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 3 cut(s) 65, 142, 178
HpaII CCGG 1 cut(s) 394
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 159, 435
Hpy188I TCNGA 4 cut(s) 183, 292, 384, 501
Hpy188III TCNNGA 6 cut(s) 62, 104, 151, 253, 268, 509
Hpy8I GTNNAC 2 cut(s) 159, 435
HpyAV CCTTC 2 cut(s) 6, 435
HpyCH4V TGCA 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 330
KpnI GGTACC 1 cut(s) 88
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 4 cut(s) 31, 106, 183, 264
LmnI GCTCC 2 cut(s) 131, 458
Lsp1109I GCAGC 1 cut(s) 538
MaeI CTAG 1 cut(s) 89
MalI GATC 4 cut(s) 33, 108, 185, 266
MbiI CCGCTC 1 cut(s) 380
MboI GATC 4 cut(s) 31, 106, 183, 264
MboII GAAGA 7 cut(s) 214, 268, 274, 367, 420, 547, 553
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 1 cut(s) 502
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 3 cut(s) 270, 390, 480
MnlI CCTC 2 cut(s) 238, 480
MroNI GCCGGC 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 1 cut(s) 402
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NaeI GCCGGC 1 cut(s) 395
NdeII GATC 4 cut(s) 31, 106, 183, 264
NgoMIV GCCGGC 1 cut(s) 393
NlaIV GGNNCC 3 cut(s) 86, 420, 454
PdiI GCCGGC 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 65, 142
PkrI GCNGC 2 cut(s) 379, 553
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 86, 420, 454
RsaI GTAC 3 cut(s) 86, 299, 365
RsaNI GTAC 3 cut(s) 85, 298, 364
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 2 cut(s) 378, 552
Sau3AI GATC 4 cut(s) 31, 106, 183, 264
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 161
SfcI CTRYAG 1 cut(s) 51
Sse9I AATT 1 cut(s) 502
SsiI CCGC 1 cut(s) 378
SspI AATATT 1 cut(s) 523
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 300
TaqI TCGA 4 cut(s) 105, 150, 252, 595
TasI AATT 1 cut(s) 502
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 2 cut(s) 65, 142
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 41, 128
TseI GCWGC 1 cut(s) 551
TspDTI ATGAA 3 cut(s) 275, 548, 554
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 2 cut(s) 41, 128
VneI GTGCAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.