Rh1AG318700

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000297
Physical Location & Seq
Reverse (-)
55303543 .. 55303779
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG318700.1

Sequence Viewer

Length: 237 bp
ATGAAGAACAAGAAAATGAGTTTCAAGTGGTCGGAGTTGTACCAGGCCAATTCGAAGAGGATGGAAGAGGATGAGAAAGAAGTCGGTGAAAGGTTGAAGAAGCTGTACGAGAAAGAAGCTGCTCGGAAACAAAGCCGGCAAGTTAAGGTGTTGGACAAGGTTCCACCTTCTTCATCAAGCAACAAAAGAACTGGCTCCAAGAAAGAGAGCAAACTGATGAGCAAATTGAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

78

Amino Acids

9.22

Weight (kDa)

10.17

Isoelectric Point (pI)

67.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 41, 107
AgsI TTSAA 2 cut(s) 25, 97
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 2 cut(s) 103, 119
AluI AGCT 2 cut(s) 103, 119
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 98
AsuII TTCGAA 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 44
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 162, 196
BmrFI CCNGG 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 66, 76
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 136
BsnI GGCC 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 53
BspANI GGCC 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 162, 196
BspT104I TTCGAA 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 2 cut(s) 50, 60
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 137
BstF5I GGATG 2 cut(s) 66, 76
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 2 cut(s) 66, 76
Cac8I GCNNGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 135
Csp6I GTAC 2 cut(s) 40, 106
CviJI RGCY 5 cut(s) 47, 103, 119, 135, 195
CviKI_1 RGCY 5 cut(s) 47, 103, 119, 135, 195
CviQI GTAC 2 cut(s) 40, 106
Eam1104I CTCTTC 2 cut(s) 50, 60
EarI CTCTTC 2 cut(s) 50, 60
EcoRII CCWGG 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 73, 83
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 136
HpaII CCGG 1 cut(s) 136
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 34, 126
HpyAV CCTTC 1 cut(s) 177
KroI GCCGGC 1 cut(s) 135
KroNI GCCGGC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 4 cut(s) 29, 56, 149, 177
Lsp1109I GCAGC 1 cut(s) 106
MboII GAAGA 5 cut(s) 16, 67, 77, 109, 162
MluCI AATT 2 cut(s) 49, 224
MmeI TCCRAC 2 cut(s) 12, 132
MnlI CCTC 3 cut(s) 51, 61, 222
MroNI GCCGGC 1 cut(s) 135
MseI TTAA 1 cut(s) 144
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 137
NgoMIV GCCGGC 1 cut(s) 135
NlaIV GGNNCC 2 cut(s) 162, 196
NspV TTCGAA 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 162, 196
RsaI GTAC 2 cut(s) 41, 107
RsaNI GTAC 2 cut(s) 40, 106
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 44
SetI ASST 6 cut(s) 95, 105, 121, 150, 162, 169
SfuI TTCGAA 1 cut(s) 53
Sse9I AATT 2 cut(s) 49, 224
StyD4I CCNGG 1 cut(s) 42
TaqI TCGA 1 cut(s) 53
TasI AATT 2 cut(s) 49, 224
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 17, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.