Prupe.3G169700_v2.0.a1

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000297
Physical Location & Seq
Reverse (-)
18847972 .. 18850731
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G169700.3

Sequence Viewer

Length: 696 bp
ATGGATGAAGAATTTACAAGTGTGGAGCCTCCATCTTTGGTTGATCTGTGCATTAATACGGCAATAGATAATATAAGGCACCTTGGAGATGTTGGTGAAACAGAACTTTATTTTCTTGAGAGAATTCTACCACATTGTACGGTCGATCAGTTGAGGCATGTAGAGAAGAGTACAAAAGGTAGAGATTTGAGTCCAATAACAGATAATTTGTGGAGGAAATTATATCAAAAGGAGTTTGGTATTGAGAGGACTAATCTGGTGATTGAGAGGATGAAAAAGAAGAAAGTTTCATTCAGATGGAACCAATTGTATGAGGCCAAATTGAGGGAAGTGGATGTGGCTGAAAATAAAGTAGCTGACCTCTTGAAGAGTCTATATCAAAAGGAAGATGCTCGAAAACAAAGTCGGCAAGTTCGTATTTGCACAAAGGTTCCGCCATCATCGAATAAAAGAAGCTTTGGCAATGGGCCTGGCTACAATGTTACCGCAAAGAGCAACTTGATGAAGAAATCAAAAATAGATTTTCTTAAAAGTCATGAGGTGAGAAATCTTGCAGCTATGAAGAAAAAATCGCTCCAGAAGAGTTACAGTGTCCCTCCTGTGAAGCGGCCAGGTGAGTTTTCCGGGAAAGATTCGGCTTCAAGTTCTAAACAACCCAAGCCGATAGAGAGGAATTTAAAACGCTATCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

232

Amino Acids

26.68

Weight (kDa)

9.77

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 78
AciI CCGC 3 cut(s) 434, 486, 607
AcoI YGGCCR 1 cut(s) 608
AcsI RAATTY 3 cut(s) 11, 123, 673
AfaI GTAC 2 cut(s) 139, 172
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 2 cut(s) 367, 642
AjnI CCWGG 2 cut(s) 469, 610
AluBI AGCT 3 cut(s) 356, 456, 557
AluI AGCT 3 cut(s) 356, 456, 557
AoxI GGCC 3 cut(s) 315, 467, 608
ApeKI GCWGC 1 cut(s) 554
ApoI RAATTY 3 cut(s) 11, 123, 673
ArsI GACNNNNNNTTYG 2 cut(s) 388, 420
AseI ATTAAT 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 467
AsuC2I CCSGG 1 cut(s) 625
AsuHPI GGTGA 4 cut(s) 107, 271, 553, 626
BanI GGYRCC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 566
BccI CCATC 3 cut(s) 40, 291, 445
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 2 cut(s) 471, 612
BcnI CCSGG 1 cut(s) 625
BisI GCNGC 2 cut(s) 555, 608
BlsI GCNGC 2 cut(s) 556, 609
Bme1390I CCNGG 3 cut(s) 471, 612, 625
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 4 cut(s) 27, 80, 302, 432
BmrFI CCNGG 3 cut(s) 471, 612, 625
BmsI GCATC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 625
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 2 cut(s) 471, 612
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 3 cut(s) 10, 276, 340
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 1 cut(s) 469
BseXI GCAGC 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 3 cut(s) 317, 469, 610
BshNI GGYRCC 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 624
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 578
BsnI GGCC 3 cut(s) 317, 469, 610
Bsp143I GATC 2 cut(s) 43, 145
BspACI CCGC 3 cut(s) 434, 486, 607
BspANI GGCC 3 cut(s) 317, 469, 610
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 4 cut(s) 27, 80, 302, 432
BspT107I GGYRCC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 469
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 43, 145
BssT1I CCWWGG 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 471, 612
Bst4CI ACNGT 2 cut(s) 142, 590
Bst6I CTCTTC 3 cut(s) 161, 362, 575
BstF5I GGATG 3 cut(s) 10, 276, 340
BstKTI GATC 2 cut(s) 46, 148
BstMBI GATC 2 cut(s) 43, 145
BstMCI CGRYCG 1 cut(s) 144
BstNI CCWGG 2 cut(s) 471, 612
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 3 cut(s) 469, 610, 623
BstV1I GCAGC 1 cut(s) 566
BsuRI GGCC 3 cut(s) 317, 469, 610
BtsCI GGATG 3 cut(s) 10, 276, 340
BtsIMutI CAGTG 1 cut(s) 595
CciI TCATGA 1 cut(s) 535
Cfr13I GGNCC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 138, 171
CviAII CATG 2 cut(s) 158, 536
CviQI GTAC 2 cut(s) 138, 171
DpnI GATC 2 cut(s) 45, 147
DpnII GATC 2 cut(s) 43, 145
DraI TTTAAA 1 cut(s) 678
EaeI YGGCCR 1 cut(s) 608
Eam1104I CTCTTC 3 cut(s) 161, 362, 575
EarI CTCTTC 3 cut(s) 161, 362, 575
EciI GGCGGA 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 2 cut(s) 469, 610
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 2 cut(s) 161, 539
FaiI YATR 7 cut(s) 74, 159, 223, 312, 376, 537, 560
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FaqI GGGAC 1 cut(s) 578
FatI CATG 2 cut(s) 157, 535
Fnu4HI GCNGC 2 cut(s) 555, 608
FokI GGATG 3 cut(s) 17, 283, 347
Fsp4HI GCNGC 2 cut(s) 555, 608
GluI GCNGC 2 cut(s) 555, 608
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 3 cut(s) 317, 469, 610
HapII CCGG 1 cut(s) 624
Hin1II CATG 2 cut(s) 161, 539
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 3 cut(s) 190, 370, 632
HpaII CCGG 1 cut(s) 624
HphI GGTGA 4 cut(s) 107, 271, 553, 626
Hpy188I TCNGA 2 cut(s) 296, 695
Hpy188III TCNNGA 4 cut(s) 116, 364, 536, 577
HpyCH4III ACNGT 2 cut(s) 142, 590
HpyCH4V TGCA 3 cut(s) 51, 423, 554
Hsp92II CATG 2 cut(s) 161, 539
Kzo9I GATC 2 cut(s) 43, 145
LmnI GCTCC 2 cut(s) 25, 579
LpnPI CCDG 8 cut(s) 242, 456, 483, 590, 597, 612, 624, 637
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 481, 584
MalI GATC 2 cut(s) 45, 147
MboI GATC 2 cut(s) 43, 145
MboII GAAGA 8 cut(s) 20, 178, 292, 379, 398, 517, 574, 592
MfeI CAATTG 1 cut(s) 305
MluCI AATT 7 cut(s) 11, 123, 205, 218, 305, 320, 673
MlyI GAGTC 2 cut(s) 199, 379
MseI TTAA 3 cut(s) 54, 528, 677
MslI CAYNNNNRTG 1 cut(s) 295
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 3 cut(s) 471, 612, 625
MunI CAATTG 1 cut(s) 305
MvaI CCWGG 2 cut(s) 471, 612
NciI CCSGG 1 cut(s) 625
NdeII GATC 2 cut(s) 43, 145
NlaIII CATG 2 cut(s) 161, 539
NlaIV GGNNCC 4 cut(s) 27, 80, 302, 432
NspI RCATGY 1 cut(s) 161
PagI TCATGA 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PfeI GAWTC 1 cut(s) 632
PfoI TCCNGGA 1 cut(s) 623
PkrI GCNGC 2 cut(s) 556, 609
PleI GAGTC 2 cut(s) 198, 378
PpsI GAGTC 2 cut(s) 198, 378
PshBI ATTAAT 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 469, 610
PspGI CCWGG 2 cut(s) 469, 610
PspN4I GGNNCC 4 cut(s) 27, 80, 302, 432
PspPI GGNCC 1 cut(s) 467
RsaI GTAC 2 cut(s) 139, 172
RsaNI GTAC 2 cut(s) 138, 171
RseI CAYNNNNRTG 1 cut(s) 295
SaqAI TTAA 3 cut(s) 54, 528, 677
SatI GCNGC 2 cut(s) 555, 608
Sau3AI GATC 2 cut(s) 43, 145
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 2 cut(s) 199, 379
ScrFI CCNGG 3 cut(s) 471, 612, 625
SetI ASST 9 cut(s) 84, 181, 358, 363, 432, 458, 543, 559, 616
SfaNI GCATC 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 7 cut(s) 11, 123, 205, 218, 305, 320, 673
SsiI CCGC 3 cut(s) 434, 486, 607
StyD4I CCNGG 3 cut(s) 469, 610, 623
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 142, 590
TaqI TCGA 3 cut(s) 144, 394, 443
TasI AATT 7 cut(s) 11, 123, 205, 218, 305, 320, 673
TatI WGTACW 1 cut(s) 170
TauI GCSGC 1 cut(s) 610
TfiI GAWTC 1 cut(s) 632
Tru1I TTAA 3 cut(s) 54, 528, 677
Tru9I TTAA 3 cut(s) 54, 528, 677
TscAI CASTG 1 cut(s) 595
TseI GCWGC 1 cut(s) 554
TspDTI ATGAA 5 cut(s) 21, 279, 287, 518, 575
TspRI CASTG 1 cut(s) 595
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 3 cut(s) 11, 123, 673
XceI RCATGY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.