Rroxscaffold_1G00028200

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000297
Physical Location & Seq
Reverse (-)
35898341 .. 35899167
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028200.1

Sequence Viewer

Length: 324 bp
ATGAAGATCAAGAAAGTGAGTTTCAAGTGGTCGGAATTGTACCAGACCAAGTTGAAGAGAGTGGAAGAGGATGAGAAACAAGTGGGAGAAAGATTGAAGACGCTGTATCAGAAAGAAGCTGCCAGGAAACAAAGCCGGCAAGTTAGGGTTTTGGACAAGCTTCCGCCTTCTTCGTCAAGCAATAGAAGAAGTGGTTCCACCAAAGAGAGCAAACTGATGAAAAAATTGAGAAAAGAGTATCACAACTGTCTAGAGGTGAAAAATATTGAAGCTATGAAGATGAAGAGAAGTGCCAAGTGTTCTAGTCTCATCAAAAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

107

Amino Acids

12.63

Weight (kDa)

10.25

Isoelectric Point (pI)

66.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AfaI GTAC 1 cut(s) 41
AgsI TTSAA 4 cut(s) 25, 55, 97, 269
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 3 cut(s) 119, 160, 272
AluI AGCT 3 cut(s) 119, 160, 272
Alw26I GTCTC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 251, 303
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 104
Bse118I RCCGGY 1 cut(s) 135
BseBI CCWGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 135
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 3 cut(s) 50, 60, 278
BstC8I GCNNGC 1 cut(s) 137
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 6
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 135
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 321
CviJI RGCY 5 cut(s) 119, 135, 160, 272, 319
CviKI_1 RGCY 5 cut(s) 119, 135, 160, 272, 319
CviQI GTAC 1 cut(s) 40
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 3 cut(s) 50, 60, 278
EarI CTCTTC 3 cut(s) 50, 60, 278
EciI GGCGGA 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 122
FaeI CATG 1 cut(s) 324
FaiI YATR 2 cut(s) 275, 322
FatI CATG 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 251, 303
GluI GCNGC 1 cut(s) 120
HapII CCGG 1 cut(s) 136
HgaI GACGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 158
HpaII CCGG 1 cut(s) 136
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 34, 111
Hpy188III TCNNGA 2 cut(s) 10, 251
HpyAV CCTTC 1 cut(s) 177
HpyCH4III ACNGT 1 cut(s) 248
Hsp92II CATG 1 cut(s) 324
KroI GCCGGC 1 cut(s) 135
KroNI GCCGGC 1 cut(s) 137
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 4 cut(s) 56, 109, 136, 149
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 2 cut(s) 251, 303
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 8 cut(s) 16, 67, 77, 109, 162, 198, 289, 295
MluCI AATT 2 cut(s) 35, 224
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 2 cut(s) 61, 247
MroNI GCCGGC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 193
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
NaeI GCCGGC 1 cut(s) 137
NdeII GATC 1 cut(s) 6
NgoMIV GCCGGC 1 cut(s) 135
NlaIII CATG 1 cut(s) 324
NlaIV GGNNCC 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 196
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 124
SetI ASST 4 cut(s) 121, 162, 258, 274
Sse9I AATT 2 cut(s) 35, 224
SsiI CCGC 1 cut(s) 164
SspI AATATT 1 cut(s) 265
SspMI CTAG 2 cut(s) 251, 303
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 248
TasI AATT 2 cut(s) 35, 224
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 17, 233, 290, 296
XbaI TCTAGA 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 2 cut(s) 251, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.