Rh2BG147600

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000297
Physical Location & Seq
Reverse (-)
12702781 .. 12703690
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG147600.1

Sequence Viewer

Length: 663 bp
ATGGAAACCACAGAGCTCACTCACTTCACTCACAAAACAACCATCACAATGGAGAAGGGAAGGTTAATCCGTCTCAACGATCACTGGGTCTCCATCGCTATAGACAATCTTGATTCTTTTGGGGATGTTGGCTACCTAGACTTCAGGTTTCTCGATCAACTCTTACCCCACTGCTCCAAAGATCAGTTGATTCACATCGAGAAGAGCACAAAAGATGTAGACCTGACTCCAATCACCGATAAGCTGTGGAAGAGGTTCTTCGAGAGAGACTTCGGTGGCAAAACCACCGATGAGGTGATCCAGAAGATGAAGATCAAGAAAATGAGTTTCAAGTGGTCGGAGTTGTACGAGGCCAAGTTGAAGAGGATGGAAGAGGATGAGAAAGAAGTAGGTGAAAGGTTAAAGAAGCTGTATGAGAAAGAAGCTGCTCGGAAACAAAGCCGGCAAGTTAAGGTGTTGGACAAGGTTCCACCTTCTTCGTCAAGCAACAAAAGAACTGGGTCCAAGAAAGAGAGCAAGCTGATGAGCAAATTAAGGAAACAGCATCTGAATTGTCTGGAAGTGAGAAACAATGAAGCTATGAAGATGAAGAGAACTGCTGCCAAGTGTTCTGGTCTCATCAGGAAGCCAAGAACGAGTATTAAAGCTATGAACGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

220

Amino Acids

25.81

Weight (kDa)

9.72

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 41 - 149 2.8e-23 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 219
AclWI GGATC 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 127
AfaI GTAC 1 cut(s) 347
AgsI TTSAA 2 cut(s) 331, 361
AluBI AGCT 7 cut(s) 16, 244, 409, 425, 520, 578, 647
AluI AGCT 7 cut(s) 16, 244, 409, 425, 520, 578, 647
Alw21I GWGCWC 2 cut(s) 18, 209
Alw26I GTCTC 4 cut(s) 77, 94, 261, 620
AlwI GGATC 1 cut(s) 292
AlwNI CAGNNNCTG 1 cut(s) 547
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 425, 599
Asp700I GAANNNNTTC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 3 cut(s) 226, 307, 404
AvaII GGWCC 1 cut(s) 501
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 18, 209
BbvI GCAGC 2 cut(s) 412, 586
BccI CCATC 3 cut(s) 50, 101, 361
BcoDI GTCTC 4 cut(s) 77, 94, 261, 620
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 2 cut(s) 426, 600
BlsI GCNGC 2 cut(s) 427, 601
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 2 cut(s) 468, 502
BmrI ACTGGG 2 cut(s) 94, 507
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 2 cut(s) 94, 507
BsaBI GATNNNNATC 2 cut(s) 194, 311
BsaI GGTCTC 2 cut(s) 94, 620
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 441
Bse1I ACTGG 2 cut(s) 89, 502
Bse8I GATNNNNATC 2 cut(s) 194, 311
BseGI GGATG 3 cut(s) 130, 372, 382
BseJI GATNNNNATC 2 cut(s) 194, 311
BseNI ACTGG 2 cut(s) 89, 502
BseXI GCAGC 2 cut(s) 412, 586
BshFI GGCC 1 cut(s) 353
BsiHKAI GWGCWC 2 cut(s) 18, 209
BsiSI CCGG 1 cut(s) 442
BsmAI GTCTC 4 cut(s) 77, 94, 261, 620
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 353
Bso31I GGTCTC 2 cut(s) 94, 620
Bsp1286I GDGCHC 2 cut(s) 18, 209
Bsp143I GATC 5 cut(s) 79, 154, 181, 297, 312
BspANI GGCC 1 cut(s) 353
BspLI GGNNCC 2 cut(s) 468, 502
BspPI GGATC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 197
BspTNI GGTCTC 2 cut(s) 94, 620
BsrFI RCCGGY 1 cut(s) 441
BsrI ACTGG 2 cut(s) 89, 502
BssAI RCCGGY 1 cut(s) 441
BssMI GATC 5 cut(s) 79, 154, 181, 297, 312
Bst6I CTCTTC 5 cut(s) 197, 245, 356, 366, 584
BstC8I GCNNGC 2 cut(s) 443, 518
BstF5I GGATG 3 cut(s) 130, 372, 382
BstKTI GATC 5 cut(s) 82, 157, 184, 300, 315
BstMAI GTCTC 4 cut(s) 77, 94, 261, 620
BstMBI GATC 5 cut(s) 79, 154, 181, 297, 312
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 412, 586
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 3 cut(s) 130, 372, 382
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 82, 169
Cac8I GCNNGC 2 cut(s) 443, 518
CaiI CAGNNNCTG 1 cut(s) 547
Cfr10I RCCGGY 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 1 cut(s) 346
CviQI GTAC 1 cut(s) 346
DpnI GATC 5 cut(s) 81, 156, 183, 299, 314
DpnII GATC 5 cut(s) 79, 154, 181, 297, 312
Eam1104I CTCTTC 5 cut(s) 197, 245, 356, 366, 584
EarI CTCTTC 5 cut(s) 197, 245, 356, 366, 584
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 2 cut(s) 94, 620
Eco47I GGWCC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 4 cut(s) 101, 414, 581, 650
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 426, 600
FokI GGATG 3 cut(s) 137, 379, 389
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 426, 600
FspBI CTAG 1 cut(s) 137
GluI GCNGC 2 cut(s) 426, 600
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 442
HinfI GANTC 3 cut(s) 113, 190, 226
HpaII CCGG 1 cut(s) 442
HphI GGTGA 3 cut(s) 226, 307, 404
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 340, 432, 549
Hpy188III TCNNGA 8 cut(s) 110, 152, 199, 262, 301, 316, 557, 622
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 49, 54, 483
HpyCH4IV ACGT 1 cut(s) 654
HpySE526I ACGT 1 cut(s) 654
KroI GCCGGC 1 cut(s) 441
KroNI GCCGGC 1 cut(s) 443
Kzo9I GATC 5 cut(s) 79, 154, 181, 297, 312
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 9 cut(s) 70, 130, 236, 314, 455, 483, 542, 597, 607
Lsp1109I GCAGC 2 cut(s) 412, 586
LweI GCATC 1 cut(s) 553
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 654
MalI GATC 5 cut(s) 81, 156, 183, 299, 314
MboI GATC 5 cut(s) 79, 154, 181, 297, 312
MhlI GDGCHC 2 cut(s) 18, 209
MluCI AATT 2 cut(s) 530, 550
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 2 cut(s) 318, 438
MnlI CCTC 5 cut(s) 246, 286, 343, 357, 367
MroNI GCCGGC 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 5 cut(s) 65, 401, 450, 533, 642
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 442
NaeI GCCGGC 1 cut(s) 443
NdeII GATC 5 cut(s) 79, 154, 181, 297, 312
NgoMIV GCCGGC 1 cut(s) 441
NlaIV GGNNCC 2 cut(s) 468, 502
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 113, 190
PkrI GCNGC 2 cut(s) 427, 601
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 468, 502
PspPI GGNCC 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 547
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 5 cut(s) 65, 401, 450, 533, 642
SatI GCNGC 2 cut(s) 426, 600
Sau3AI GATC 5 cut(s) 79, 154, 181, 297, 312
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 1 cut(s) 220
SduI GDGCHC 2 cut(s) 18, 209
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 2 cut(s) 530, 550
SspMI CTAG 1 cut(s) 137
SstI GAGCTC 1 cut(s) 18
TaiI ACGT 1 cut(s) 657
TaqI TCGA 3 cut(s) 153, 198, 261
TasI AATT 2 cut(s) 530, 550
TfiI GAWTC 2 cut(s) 113, 190
Tru1I TTAA 5 cut(s) 65, 401, 450, 533, 642
Tru9I TTAA 5 cut(s) 65, 401, 450, 533, 642
TscAI CASTG 2 cut(s) 89, 176
TseI GCWGC 2 cut(s) 425, 599
TspDTI ATGAA 4 cut(s) 323, 588, 596, 602
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 2 cut(s) 89, 176
VpaK11BI GGWCC 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.