Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000297

Physical Location & Seq

Genomic Coordinates Forward (+)

5572883 .. 5574442

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1064800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTCGAGCAGTTGAGGTGCGTAGAGAAGAGTACCAGAGGCAGAGATTTGAGTCCAGTCACTGATAAGTTGTGGCGGAATTTCTATGTGGAGGAGTTCGGTGCTTCGAGGGCTGATCAGGCGGTCGAAAACACCAAGAAGTCGAATGCCGCATTCAAATGGAAAGAGCTCTACGAGACAAAGCTGGAGGAGGTCAACAAGAAAGAAAAGAAGGCAGCTGAGAGGTTGAAGAGTCGGTATCAAATGGAAGCTGCTCGGAAACAAAGCCGGCGAGTTGTTTGCACAGAGGCAGAGGAAGGGAGAGAACGGGACTACCAGTCCGCTCGCTCTGGAGGGTTCTCGCTAAGACCTTCTAGCGAAGGTTTTATCGACCCAAGTCCCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031463 GO:0031974 GO:0031981 GO:0032784 GO:0032991 GO:0034243 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070013 GO:0070449 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elongin_A

Protein Analysis

129

Amino Acids

14.83

Weight (kDa)

9.17

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elongin_A	PF06881	3 - 91	2e-14	RNA polymerase II transcription factor SIII (Elongin) subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42780 AT2G42780
fragaria_vesca	FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica	MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica	Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis	pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis	RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata	RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora	Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa	Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha	Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana	Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	323
AciI	CCGC	4 cut(s)	76, 122, 150, 321
AcsI	RAATTY	1 cut(s)	79
AfaI	GTAC	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	157, 229
AhdI	GACNNNNNGTC	1 cut(s)	316
AluBI	AGCT	4 cut(s)	169, 184, 218, 251
AluI	AGCT	4 cut(s)	169, 184, 218, 251
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	62
ApeKI	GCWGC	2 cut(s)	215, 251
ApoI	RAATTY	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	227, 238
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	354
BisI	GCNGC	3 cut(s)	150, 216, 252
BlsI	GCNGC	3 cut(s)	151, 217, 253
BmeRI	GACNNNNNGTC	1 cut(s)	316
BoxI	GACNNNNGTC	1 cut(s)	375
BpmI	CTGGAG	2 cut(s)	206, 351
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	2 cut(s)	56, 316
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	56, 316
BseRI	GAGGAG	2 cut(s)	107, 203
BseXI	GCAGC	2 cut(s)	227, 238
Bsh1285I	CGRYCG	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	2 cut(s)	323, 363
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	2 cut(s)	323, 363
BsmI	GAATGC	2 cut(s)	151, 152
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	4 cut(s)	76, 122, 150, 321
BspCNI	CTCAG	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	56, 316
BssAI	RCCGGY	1 cut(s)	267
BssMI	GATC	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	23, 224
BstC8I	GCNNGC	2 cut(s)	269, 325
BstDEI	CTNAG	2 cut(s)	219, 344
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	115
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 119
BstPAI	GACNNNNGTC	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	227, 238
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	269, 325
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	33
CviJI	RGCY	6 cut(s)	113, 169, 184, 218, 251, 267
CviKI_1	RGCY	6 cut(s)	113, 169, 184, 218, 251, 267
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	219, 344
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DriI	GACNNNNNGTC	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	23, 224
Eam1105I	GACNNNNNGTC	1 cut(s)	316
EarI	CTCTTC	2 cut(s)	23, 224
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	171
FaiI	YATR	1 cut(s)	87
FaqI	GGGAC	2 cut(s)	323, 363
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	150, 216, 252
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	3 cut(s)	150, 216, 252
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	3 cut(s)	150, 216, 252
GsuI	CTGGAG	2 cut(s)	206, 351
HapII	CCGG	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	52, 232
HpaII	CCGG	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	330
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	4 cut(s)	205, 290, 353, 360
HpyCH4V	TGCA	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 119
HpyF3I	CTNAG	2 cut(s)	219, 344
KroI	GCCGGC	1 cut(s)	267
KroNI	GCCGGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	49, 69, 104, 170, 281, 315, 329
Lsp1109I	GCAGC	2 cut(s)	227, 238
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	117
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	40, 241
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	79
MlyI	GAGTC	2 cut(s)	61, 241
MroNI	GCCGGC	1 cut(s)	267
MseI	TTAA	1 cut(s)	385
MslI	CAYNNNNRTG	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	268
Mva1269I	GAATGC	2 cut(s)	151, 152
MwoI	GCNNNNNNNGC	2 cut(s)	110, 119
NaeI	GCCGGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	115
NgoMIV	GCCGGC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	58
PctI	GAATGC	2 cut(s)	151, 152
PdiI	GCCGGC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	151, 217, 253
PleI	GAGTC	2 cut(s)	60, 240
PpsI	GAGTC	2 cut(s)	60, 240
PshAI	GACNNNNGTC	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	3 cut(s)	150, 216, 252
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	61, 241
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	9 cut(s)	20, 171, 186, 195, 220, 227, 253, 352, 364
SmiMI	CAYNNNNRTG	1 cut(s)	157
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	4 cut(s)	76, 122, 150, 321
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	171
TaqI	TCGA	5 cut(s)	6, 107, 126, 143, 369
TasI	AATT	1 cut(s)	79
TauI	GCSGC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	215, 251
Tsp45I	GTSAC	1 cut(s)	58
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	79
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.