RLG00000034860

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000297
Physical Location & Seq
Forward (+)
56149623 .. 56150240
618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034860

Sequence Viewer

Length: 618 bp
ATGGAGAAGGGAAAGTTAATATGTCTTGATGATCGTTGGGTTTCCATTGCAATAGACCATCGAGAGGATCTTGGGGATGTTGGATCCCTAGACTTCAAGTTTCTGGAGAAGGTCTTACCCCACTGCTCCAAAGACCAGTTGATACATATCGAGAAGAGCACAAAAGGTAGAGATCTGAGTCCGGTCACCAATAAGTTGTGGAAGAGTTTCTTCGAGAGAGAGTTTGGTGTCAAAGCCACAGATAGGGTGATCGAGAAGATGAAGATCAAGAAAGTTAGTTTCAAGTGGTCGGAGTTGTATCAGGCCAAGTCGAAGAGAGTGGAAGAGGCTGAGAAAGAAGCGGGTGAAAGATTGAGGCGGCTGTATCAGATAGAAAGCGCCCGGAAACAAAGCCGGCAAGTTAGGGTTTTGGACAAGGATCCGCCTGCTTCTTCATCAAGCACTAAAAGAAGTGGCTCATCAAACAAAGAGAGCAAACTGATGAACAAAGTGAGGAAAGAGTATCTCAACTGTCTCGAGGTGAGAAATCTTGAAGCTATGAAGATGAAGAGAACTGCCAAGCAGTGTTATAGTCACGTAAAGAAGCCAAGAACTATTCAGGCTATGAACGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

206

Amino Acids

23.95

Weight (kDa)

9.81

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 25 - 133 3.8e-23 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 341, 358, 422
AclWI GGATC 5 cut(s) 75, 78, 91, 413, 426
AfiI CCNNNNNNNGG 2 cut(s) 64, 243
AgsI TTSAA 3 cut(s) 97, 283, 533
AluBI AGCT 1 cut(s) 536
AluI AGCT 1 cut(s) 536
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 5 cut(s) 75, 78, 91, 413, 426
Ama87I CYCGRG 1 cut(s) 515
AoxI GGCC 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 380
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 4 cut(s) 178, 259, 356, 532
AvaI CYCGRG 1 cut(s) 515
BamHI GGATCC 2 cut(s) 83, 418
Bbv12I GWGCWC 1 cut(s) 161
BccI CCATC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 381
BglII AGATCT 1 cut(s) 172
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 515
BmiI GGNNCC 2 cut(s) 85, 420
BmrFI CCNGG 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 382
BsaAI YACGTR 1 cut(s) 577
BsaBI GATNNNNATC 2 cut(s) 146, 263
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 243
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 2 cut(s) 146, 263
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 2 cut(s) 146, 263
BseLI CCNNNNNNNGG 2 cut(s) 64, 243
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 167, 321
BseNI ACTGG 1 cut(s) 136
BshFI GGCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 3 cut(s) 182, 382, 394
BslI CCNNNNNNNGG 2 cut(s) 64, 243
BsmAI GTCTC 1 cut(s) 518
BsnI GGCC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 7 cut(s) 31, 67, 83, 172, 249, 264, 418
BspACI CCGC 3 cut(s) 341, 358, 422
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 2 cut(s) 168, 322
BspLI GGNNCC 2 cut(s) 85, 420
BspPI GGATC 5 cut(s) 75, 78, 91, 413, 426
BspQI GCTCTTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 393
BssMI GATC 7 cut(s) 31, 67, 83, 172, 249, 264, 418
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 5 cut(s) 149, 197, 308, 318, 542
BstBAI YACGTR 1 cut(s) 577
BstC8I GCNNGC 2 cut(s) 395, 426
BstDEI CTNAG 2 cut(s) 176, 330
BstEII GGTNACC 1 cut(s) 184
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 7 cut(s) 34, 70, 86, 175, 252, 267, 421
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 7 cut(s) 31, 67, 83, 172, 249, 264, 418
BstPI GGTNACC 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 380
BstX2I RGATCY 4 cut(s) 67, 83, 172, 418
BstYI RGATCY 4 cut(s) 67, 83, 172, 418
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 2 cut(s) 121, 569
BtsIMutI CAGTG 2 cut(s) 121, 569
Cac8I GCNNGC 2 cut(s) 395, 426
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 393
CviJI RGCY 9 cut(s) 236, 305, 329, 361, 393, 456, 536, 586, 602
CviKI_1 RGCY 9 cut(s) 236, 305, 329, 361, 393, 456, 536, 586, 602
DdeI CTNAG 2 cut(s) 176, 330
DpnI GATC 7 cut(s) 33, 69, 85, 174, 251, 266, 420
DpnII GATC 7 cut(s) 31, 67, 83, 172, 249, 264, 418
Eam1104I CTCTTC 5 cut(s) 149, 197, 308, 318, 542
EarI CTCTTC 5 cut(s) 149, 197, 308, 318, 542
EciI GGCGGA 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 515
Eco91I GGTNACC 1 cut(s) 184
EcoO65I GGTNACC 1 cut(s) 184
FaiI YATR 5 cut(s) 22, 147, 539, 570, 605
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FauI CCCGC 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 379
GluI GCNGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 1 cut(s) 305
HapII CCGG 3 cut(s) 182, 382, 394
HhaI GCGC 1 cut(s) 380
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HinfI GANTC 1 cut(s) 178
HpaII CCGG 3 cut(s) 182, 382, 394
HphI GGTGA 4 cut(s) 178, 259, 356, 532
Hpy188I TCNGA 3 cut(s) 177, 292, 369
Hpy188III TCNNGA 9 cut(s) 26, 62, 104, 151, 214, 253, 268, 515, 530
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 2 cut(s) 576, 609
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 176, 330
HpySE526I ACGT 2 cut(s) 576, 609
HspAI GCGC 1 cut(s) 378
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Kzo9I GATC 7 cut(s) 31, 67, 83, 172, 249, 264, 418
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 8 cut(s) 89, 149, 195, 287, 395, 407, 438, 584
MaeI CTAG 1 cut(s) 89
MaeII ACGT 2 cut(s) 576, 609
MaeIII GTNAC 2 cut(s) 184, 572
MalI GATC 7 cut(s) 33, 69, 85, 174, 251, 266, 420
MboI GATC 7 cut(s) 31, 67, 83, 172, 249, 264, 418
MflI RGATCY 4 cut(s) 67, 83, 172, 418
MhlI GDGCHC 1 cut(s) 161
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 2 cut(s) 61, 270
MnlI CCTC 5 cut(s) 58, 319, 348, 486, 511
MroNI GCCGGC 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 1 cut(s) 17
MspI CCGG 3 cut(s) 182, 382, 394
MspR9I CCNGG 1 cut(s) 382
NaeI GCCGGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 382
NdeII GATC 7 cut(s) 31, 67, 83, 172, 249, 264, 418
NgoMIV GCCGGC 1 cut(s) 393
NlaIV GGNNCC 2 cut(s) 85, 420
NmuCI GTSAC 2 cut(s) 184, 572
PaeR7I CTCGAG 1 cut(s) 515
PciSI GCTCTTC 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Ppu21I YACGTR 1 cut(s) 577
PspEI GGTNACC 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 85, 420
PsuI RGATCY 4 cut(s) 67, 83, 172, 418
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 7 cut(s) 31, 67, 83, 172, 249, 264, 418
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 1 cut(s) 161
SetI ASST 6 cut(s) 114, 169, 522, 538, 579, 612
Sfr274I CTCGAG 1 cut(s) 515
SlaI CTCGAG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SsiI CCGC 3 cut(s) 341, 358, 422
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 380
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 2 cut(s) 579, 612
TaqI TCGA 6 cut(s) 61, 150, 213, 252, 311, 516
TauI GCSGC 1 cut(s) 361
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 2 cut(s) 128, 569
TseFI GTSAC 2 cut(s) 184, 572
Tsp45I GTSAC 2 cut(s) 184, 572
TspDTI ATGAA 5 cut(s) 275, 423, 497, 554, 560
TspRI CASTG 2 cut(s) 128, 569
XhoI CTCGAG 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.