Rmu_sc0004458.1_g000001

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004458.1
OG0000297
Physical Location & Seq
Forward (+)
2478 .. 2996
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004458.1_g000001.1.cds

Sequence Viewer

Length: 519 bp
atggattggaattggctcttaccccactgctccaaagaccagttaattcacatcgagaagtgcacaaaaggtacagacctgactccgatcaccgataagctttggaagaagttcttcgagagagacttcggtggcaaagccactgatgaggtgatccagaagataaagatcaagaaagtgagcttcaagtggtcagagttgtaccaggaaaagtccaagagagtggaaaaggctgagaaagaagtcggtgaaaggttgaagaagctgtatgagaaagaagatgctcggaaacaaagccggcaagttagggtgttagacaaggttccacctttttcgtcaagcaacaaaagaaccggctccaacaaagatagcaaactgatgaacaaattgaggaaacagcatctgaattgtctggaaatgagaaatattcaagctatgaagatgaagagaactgctgccaactgttctggtctcatcagaaagccaaggacgagtattcaagctatgaacgtgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

172

Amino Acids

20.27

Weight (kDa)

9.99

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 148
AfaI GTAC 2 cut(s) 73, 203
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 4 cut(s) 187, 259, 431, 500
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 5 cut(s) 100, 183, 265, 434, 503
AluI AGCT 5 cut(s) 100, 183, 265, 434, 503
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 117, 476
Alw44I GTGCAC 1 cut(s) 61
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 403
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 455
Asp700I GAANNNNTTC 2 cut(s) 110, 113
AsuHPI GGTGA 3 cut(s) 82, 163, 260
BaeGI GKGCMC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 442
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 117, 476
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 324, 358
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 271, 409
BsaBI GATNNNNATC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 485
Bse118I RCCGGY 2 cut(s) 297, 353
Bse1I ACTGG 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 167
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 485
BseJI GATNNNNATC 1 cut(s) 167
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 298, 354
BsmAI GTCTC 2 cut(s) 117, 476
Bso31I GGTCTC 1 cut(s) 476
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 87, 153, 168
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 324, 358
BspPI GGATC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 476
BsrFI RCCGGY 2 cut(s) 297, 353
BsrI ACTGG 1 cut(s) 40
BssAI RCCGGY 2 cut(s) 297, 353
BssECI CCNNGG 1 cut(s) 485
BssMI GATC 3 cut(s) 87, 153, 168
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 3 cut(s) 90, 156, 171
BstMAI GTCTC 2 cut(s) 117, 476
BstMBI GATC 3 cut(s) 87, 153, 168
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 141
Cac8I GCNNGC 1 cut(s) 299
CaiI CAGNNNCTG 1 cut(s) 403
Cfr10I RCCGGY 2 cut(s) 297, 353
Csp6I GTAC 2 cut(s) 72, 202
CviQI GTAC 2 cut(s) 72, 202
DdeI CTNAG 1 cut(s) 234
DpnI GATC 3 cut(s) 89, 155, 170
DpnII GATC 3 cut(s) 87, 153, 168
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco130I CCWWGG 1 cut(s) 485
Eco31I GGTCTC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 485
FaiI YATR 3 cut(s) 270, 437, 506
FalI AAGNNNNNCTT 2 cut(s) 98, 130
Fnu4HI GCNGC 1 cut(s) 456
Fsp4HI GCNGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 456
HapII CCGG 2 cut(s) 298, 354
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 82
HpaII CCGG 2 cut(s) 298, 354
HphI GGTGA 3 cut(s) 82, 163, 260
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 5 cut(s) 87, 196, 288, 405, 479
Hpy188III TCNNGA 5 cut(s) 55, 118, 157, 172, 413
Hpy8I GTNNAC 1 cut(s) 63
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 510
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Kzo9I GATC 3 cut(s) 87, 153, 168
LmnI GCTCC 2 cut(s) 35, 362
LpnPI CCDG 9 cut(s) 53, 92, 170, 191, 218, 311, 367, 398, 453
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 2 cut(s) 271, 409
MaeII ACGT 1 cut(s) 510
MalI GATC 3 cut(s) 89, 155, 170
MboI GATC 3 cut(s) 87, 153, 168
MboII GAAGA 7 cut(s) 106, 118, 172, 271, 290, 451, 457
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 4 cut(s) 10, 45, 386, 406
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 2 cut(s) 142, 384
MroNI GCCGGC 1 cut(s) 297
MroXI GAANNNNTTC 2 cut(s) 110, 113
MseI TTAA 1 cut(s) 44
MspI CCGG 2 cut(s) 298, 354
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
NaeI GCCGGC 1 cut(s) 299
NdeII GATC 3 cut(s) 87, 153, 168
NgoMIV GCCGGC 1 cut(s) 297
NlaIV GGNNCC 2 cut(s) 324, 358
PdiI GCCGGC 1 cut(s) 299
PdmI GAANNNNTTC 2 cut(s) 110, 113
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 324, 358
PstNI CAGNNNCTG 1 cut(s) 403
RsaI GTAC 2 cut(s) 73, 203
RsaNI GTAC 2 cut(s) 72, 202
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 3 cut(s) 87, 153, 168
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 2 cut(s) 271, 409
Sse9I AATT 4 cut(s) 10, 45, 386, 406
SspI AATATT 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 513
TaqI TCGA 2 cut(s) 54, 117
TasI AATT 4 cut(s) 10, 45, 386, 406
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 2 cut(s) 32, 148
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 3 cut(s) 395, 452, 458
TspRI CASTG 2 cut(s) 32, 148
VneI GTGCAC 1 cut(s) 61
XmnI GAANNNNTTC 2 cut(s) 110, 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.