Transcription elongation factor B polypeptide
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 56 - 145 | 9.5e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 248, 251 |
| AcoI | YGGCCR | 1 cut(s) | 432 |
| AcsI | RAATTY | 1 cut(s) | 166 |
| AdeI | CACNNNGTG | 1 cut(s) | 233 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 149 |
| AgeI | ACCGGT | 1 cut(s) | 149 |
| AgsI | TTSAA | 6 cut(s) | 41, 160, 335, 341, 386, 416 |
| AjnI | CCWGG | 1 cut(s) | 392 |
| AleI | CACNNNNGTG | 1 cut(s) | 198 |
| AluBI | AGCT | 2 cut(s) | 312, 355 |
| AluI | AGCT | 2 cut(s) | 312, 355 |
| AoxI | GGCC | 1 cut(s) | 432 |
| ApeKI | GCWGC | 1 cut(s) | 136 |
| ApoI | RAATTY | 1 cut(s) | 166 |
| AsiGI | ACCGGT | 1 cut(s) | 149 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 1 cut(s) | 245 |
| BalI | TGGCCA | 1 cut(s) | 434 |
| BbvI | GCAGC | 1 cut(s) | 148 |
| BccI | CCATC | 1 cut(s) | 167 |
| BciT130I | CCWGG | 1 cut(s) | 394 |
| BisI | GCNGC | 3 cut(s) | 137, 249, 252 |
| BlsI | GCNGC | 3 cut(s) | 138, 250, 253 |
| Bme1390I | CCNGG | 1 cut(s) | 394 |
| BmrFI | CCNGG | 1 cut(s) | 394 |
| BpmI | CTGGAG | 1 cut(s) | 415 |
| BpuEI | CTTGAG | 1 cut(s) | 410 |
| BsaJI | CCNNGG | 2 cut(s) | 262, 392 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 198, 228 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 149 |
| Bse118I | RCCGGY | 1 cut(s) | 149 |
| Bse1I | ACTGG | 1 cut(s) | 379 |
| BseBI | CCWGG | 1 cut(s) | 394 |
| BseDI | CCNNGG | 2 cut(s) | 262, 392 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 149 |
| BseMII | CTCAG | 2 cut(s) | 131, 279 |
| BseNI | ACTGG | 1 cut(s) | 379 |
| BseXI | GCAGC | 1 cut(s) | 148 |
| BsgI | GTGCAG | 1 cut(s) | 222 |
| BshFI | GGCC | 1 cut(s) | 434 |
| BshTI | ACCGGT | 1 cut(s) | 149 |
| BsiSI | CCGG | 1 cut(s) | 150 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 149 |
| BsmI | GAATGC | 2 cut(s) | 229, 381 |
| BsnI | GGCC | 1 cut(s) | 434 |
| BspACI | CCGC | 2 cut(s) | 248, 251 |
| BspANI | GGCC | 1 cut(s) | 434 |
| BspCNI | CTCAG | 2 cut(s) | 130, 280 |
| BsrFI | RCCGGY | 1 cut(s) | 149 |
| BsrI | ACTGG | 1 cut(s) | 379 |
| BssAI | RCCGGY | 1 cut(s) | 149 |
| BssECI | CCNNGG | 2 cut(s) | 262, 392 |
| BssT1I | CCWWGG | 1 cut(s) | 262 |
| Bst2UI | CCWGG | 1 cut(s) | 394 |
| Bst4CI | ACNGT | 1 cut(s) | 197 |
| BstC8I | GCNNGC | 2 cut(s) | 310, 314 |
| BstDEI | CTNAG | 4 cut(s) | 117, 288, 302, 351 |
| BstNI | CCWGG | 1 cut(s) | 394 |
| BstSCI | CCNGG | 1 cut(s) | 392 |
| BstV1I | GCAGC | 1 cut(s) | 148 |
| BsuRI | GGCC | 1 cut(s) | 434 |
| Cac8I | GCNNGC | 2 cut(s) | 310, 314 |
| Cfr10I | RCCGGY | 1 cut(s) | 149 |
| CspAI | ACCGGT | 1 cut(s) | 149 |
| CviAII | CATG | 2 cut(s) | 50, 317 |
| CviJI | RGCY | 9 cut(s) | 139, 210, 238, 267, 293, 312, 355, 406, 434 |
| CviKI_1 | RGCY | 9 cut(s) | 139, 210, 238, 267, 293, 312, 355, 406, 434 |
| DdeI | CTNAG | 4 cut(s) | 117, 288, 302, 351 |
| DraIII | CACNNNGTG | 1 cut(s) | 233 |
| EaeI | YGGCCR | 1 cut(s) | 432 |
| Eco130I | CCWWGG | 1 cut(s) | 262 |
| EcoRII | CCWGG | 1 cut(s) | 392 |
| EcoT14I | CCWWGG | 1 cut(s) | 262 |
| ErhI | CCWWGG | 1 cut(s) | 262 |
| FaeI | CATG | 2 cut(s) | 53, 320 |
| FatI | CATG | 2 cut(s) | 49, 316 |
| FauNDI | CATATG | 1 cut(s) | 271 |
| Fnu4HI | GCNGC | 3 cut(s) | 137, 249, 252 |
| Fsp4HI | GCNGC | 3 cut(s) | 137, 249, 252 |
| GluI | GCNGC | 3 cut(s) | 137, 249, 252 |
| GsuI | CTGGAG | 1 cut(s) | 415 |
| HaeIII | GGCC | 1 cut(s) | 434 |
| HapII | CCGG | 1 cut(s) | 150 |
| Hin1II | CATG | 2 cut(s) | 53, 320 |
| HindIII | AAGCTT | 2 cut(s) | 310, 353 |
| HinfI | GANTC | 3 cut(s) | 80, 190, 399 |
| HpaII | CCGG | 1 cut(s) | 150 |
| HphI | GGTGA | 1 cut(s) | 245 |
| Hpy188I | TCNGA | 1 cut(s) | 120 |
| Hpy188III | TCNNGA | 2 cut(s) | 157, 416 |
| HpyAV | CCTTC | 1 cut(s) | 335 |
| HpyCH4III | ACNGT | 1 cut(s) | 197 |
| HpyCH4V | TGCA | 3 cut(s) | 203, 227, 316 |
| HpyF3I | CTNAG | 4 cut(s) | 117, 288, 302, 351 |
| Hsp92II | CATG | 2 cut(s) | 53, 320 |
| LpnPI | CCDG | 6 cut(s) | 163, 189, 360, 379, 395, 406 |
| Lsp1109I | GCAGC | 1 cut(s) | 148 |
| MboII | GAAGA | 2 cut(s) | 75, 117 |
| MlsI | TGGCCA | 1 cut(s) | 434 |
| MluCI | AATT | 5 cut(s) | 36, 108, 161, 166, 346 |
| MluNI | TGGCCA | 1 cut(s) | 434 |
| MnlI | CCTC | 6 cut(s) | 108, 153, 200, 249, 283, 417 |
| Mox20I | TGGCCA | 1 cut(s) | 434 |
| MroXI | GAANNNNTTC | 1 cut(s) | 112 |
| MscI | TGGCCA | 1 cut(s) | 434 |
| MseI | TTAA | 2 cut(s) | 129, 164 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| Msp20I | TGGCCA | 1 cut(s) | 434 |
| MspI | CCGG | 1 cut(s) | 150 |
| MspR9I | CCNGG | 1 cut(s) | 394 |
| Mva1269I | GAATGC | 2 cut(s) | 229, 381 |
| MvaI | CCWGG | 1 cut(s) | 394 |
| NdeI | CATATG | 1 cut(s) | 271 |
| NlaIII | CATG | 2 cut(s) | 53, 320 |
| OliI | CACNNNNGTG | 1 cut(s) | 198 |
| PctI | GAATGC | 2 cut(s) | 229, 381 |
| PdmI | GAANNNNTTC | 1 cut(s) | 112 |
| PfeI | GAWTC | 3 cut(s) | 80, 190, 399 |
| PinAI | ACCGGT | 1 cut(s) | 149 |
| PkrI | GCNGC | 3 cut(s) | 138, 250, 253 |
| Psp6I | CCWGG | 1 cut(s) | 392 |
| PspGI | CCWGG | 1 cut(s) | 392 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SaqAI | TTAA | 2 cut(s) | 129, 164 |
| SatI | GCNGC | 3 cut(s) | 137, 249, 252 |
| ScrFI | CCNGG | 1 cut(s) | 394 |
| SetI | ASST | 7 cut(s) | 125, 145, 235, 264, 314, 346, 357 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| SmlI | CTYRAG | 1 cut(s) | 425 |
| SmoI | CTYRAG | 1 cut(s) | 425 |
| Sse9I | AATT | 5 cut(s) | 36, 108, 161, 166, 346 |
| SsiI | CCGC | 2 cut(s) | 248, 251 |
| StyD4I | CCNGG | 1 cut(s) | 392 |
| StyI | CCWWGG | 1 cut(s) | 262 |
| TaaI | ACNGT | 1 cut(s) | 197 |
| TasI | AATT | 5 cut(s) | 36, 108, 161, 166, 346 |
| TauI | GCSGC | 2 cut(s) | 251, 254 |
| TfiI | GAWTC | 3 cut(s) | 80, 190, 399 |
| Tru1I | TTAA | 2 cut(s) | 129, 164 |
| Tru9I | TTAA | 2 cut(s) | 129, 164 |
| TseI | GCWGC | 1 cut(s) | 136 |
| XapI | RAATTY | 1 cut(s) | 166 |
| XmnI | GAANNNNTTC | 1 cut(s) | 112 |