Rmu_co8175074.1_g000001

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8175074.1
OG0000297
Physical Location & Seq
Forward (+)
1 .. 597
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8175074.1_g000001.1.cds

Sequence Viewer

Length: 597 bp
ctcgatgatcgttgggtctccatcgcaatagacaatctagactctttcggggatgttgggtacctagacttcaagtttctcgatcaggtcttaccccactgctccaaagaccagttgattcacatcgagaagagcaccaaaaatacagacctgactccgatcactgataagctctggaagaagatttttgagagagagttcggtgtcaaagccacagatgaggtgatacagaagatgaagatcaagaaagtgagtttcaagtggtcggaattgtaccagaccaagttgaagagagtggaagaggatgagaaacaagtgggagaaagattgaagaggctgtatcagaaagaagctgccaggaaacaaagccggcaagttagggttttggacaagcttccgccttcttcgtcaagcaatagaagaagtggttccaccaaagacagcaaactgacgaaaaaagtgagaaaagagtatcacaactgtctagaggtgaaaaatattgaagctatgaagctgaagagaagtgccaagtgttctagtctcatcaaaaagccaagaaacgactattcaagctatgaacgtcttttgaagtattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

198

Amino Acids

23.36

Weight (kDa)

9.72

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 2 cut(s) 62, 275
AgsI TTSAA 7 cut(s) 73, 259, 289, 331, 503, 570, 589
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 6 cut(s) 172, 353, 394, 506, 514, 573
AluI AGCT 6 cut(s) 172, 353, 394, 506, 514, 573
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 22, 545
ApeKI GCWGC 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 427
Asp718I GGTACC 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 235, 502
BanI GGYRCC 1 cut(s) 60
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 340
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 22, 545
BfaI CTAG 4 cut(s) 38, 65, 485, 537
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 62, 430
BmrFI CCNGG 1 cut(s) 358
BsaBI GATNNNNATC 2 cut(s) 122, 239
BsaI GGTCTC 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 112
Bse8I GATNNNNATC 2 cut(s) 122, 239
BseBI CCWGG 1 cut(s) 358
BseGI GGATG 2 cut(s) 58, 310
BseJI GATNNNNATC 2 cut(s) 122, 239
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 340
BshNI GGYRCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 370
BsmAI GTCTC 2 cut(s) 22, 545
Bso31I GGTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 4 cut(s) 7, 82, 159, 240
BspACI CCGC 1 cut(s) 398
BspLI GGNNCC 2 cut(s) 62, 430
BspQI GCTCTTC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 369
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 369
BssMI GATC 4 cut(s) 7, 82, 159, 240
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 5 cut(s) 125, 284, 294, 326, 512
BstC8I GCNNGC 1 cut(s) 371
BstF5I GGATG 2 cut(s) 58, 310
BstKTI GATC 4 cut(s) 10, 85, 162, 243
BstMAI GTCTC 2 cut(s) 22, 545
BstMBI GATC 4 cut(s) 7, 82, 159, 240
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 58, 310
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 97, 162
Cac8I GCNNGC 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 369
Csp6I GTAC 2 cut(s) 61, 274
CviQI GTAC 2 cut(s) 61, 274
DpnI GATC 4 cut(s) 9, 84, 161, 242
DpnII GATC 4 cut(s) 7, 82, 159, 240
Eam1104I CTCTTC 5 cut(s) 125, 284, 294, 326, 512
EarI CTCTTC 5 cut(s) 125, 284, 294, 326, 512
EciI GGCGGA 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 356
FaiI YATR 2 cut(s) 509, 576
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 2 cut(s) 65, 317
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 4 cut(s) 38, 65, 485, 537
GluI GCNGC 1 cut(s) 354
HapII CCGG 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 3 cut(s) 41, 118, 154
HpaII CCGG 1 cut(s) 370
HphI GGTGA 2 cut(s) 235, 502
Hpy188I TCNGA 3 cut(s) 159, 268, 345
Hpy188III TCNNGA 6 cut(s) 38, 80, 127, 175, 244, 485
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 580
HpySE526I ACGT 1 cut(s) 580
KpnI GGTACC 1 cut(s) 64
KroI GCCGGC 1 cut(s) 369
KroNI GCCGGC 1 cut(s) 371
Kzo9I GATC 4 cut(s) 7, 82, 159, 240
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 8 cut(s) 71, 125, 160, 164, 290, 343, 370, 383
Lsp1109I GCAGC 1 cut(s) 340
MaeI CTAG 4 cut(s) 38, 65, 485, 537
MaeII ACGT 1 cut(s) 580
MalI GATC 4 cut(s) 9, 84, 161, 242
MboI GATC 4 cut(s) 7, 82, 159, 240
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 1 cut(s) 269
MlyI GAGTC 2 cut(s) 35, 148
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 4 cut(s) 214, 295, 327, 481
MroNI GCCGGC 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 427
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 358
MvaI CCWGG 1 cut(s) 358
NaeI GCCGGC 1 cut(s) 371
NdeII GATC 4 cut(s) 7, 82, 159, 240
NgoMIV GCCGGC 1 cut(s) 369
NlaIV GGNNCC 2 cut(s) 62, 430
PciSI GCTCTTC 1 cut(s) 125
PdiI GCCGGC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 2 cut(s) 35, 148
PpsI GAGTC 2 cut(s) 35, 148
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 62, 430
RsaI GTAC 2 cut(s) 62, 275
RsaNI GTAC 2 cut(s) 61, 274
SapI GCTCTTC 1 cut(s) 125
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 4 cut(s) 7, 82, 159, 240
SchI GAGTC 2 cut(s) 35, 148
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 1 cut(s) 137
Sse9I AATT 1 cut(s) 269
SsiI CCGC 1 cut(s) 398
SspI AATATT 1 cut(s) 499
SspMI CTAG 4 cut(s) 38, 65, 485, 537
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 1 cut(s) 583
TaqI TCGA 3 cut(s) 3, 81, 126
TasI AATT 1 cut(s) 269
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 2 cut(s) 104, 169
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 251, 524, 591
TspRI CASTG 2 cut(s) 104, 169
XbaI TCTAGA 2 cut(s) 37, 484
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 4 cut(s) 38, 65, 485, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.