Rorug01G0305900

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000297
Physical Location & Seq
Forward (+)
42241301 .. 42241819
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0305900.1

Sequence Viewer

Length: 297 bp
ATGAAGCAAACCAGTGGAGAAGGCACCTCATCTCAATCTCAGGCAAAGGGTACCAAGAAACCACAATTGACAAAGAATGAGCTTAGGGAAAAGGTTAAGCTTAGGGCAGAAAAGCTTAAGAAAAAGAGGGATGAGCAGAAGGCAACAGCAAGACCTGCTTCAAAAGCAACCACAAAATCAACCACAACAAGTGCTGCTTCCACCACTTCACATGCTACTTCAAAGGCTAAACCTTCTGCACCAACGAGGTCATCACAAAGGATTAGAGCTGGAGCAAAGGAGGGTGGAAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

98

Amino Acids

10.47

Weight (kDa)

11.18

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 2 cut(s) 23, 50
AfaI GTAC 1 cut(s) 52
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 162, 222
AluBI AGCT 4 cut(s) 82, 100, 115, 269
AluI AGCT 4 cut(s) 82, 100, 115, 269
ApeKI GCWGC 1 cut(s) 194
Asp718I GGTACC 1 cut(s) 50
BanI GGYRCC 2 cut(s) 23, 50
BbvI GCAGC 1 cut(s) 181
BfrI CTTAAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 163
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 25, 52
BpmI CTGGAG 1 cut(s) 291
Bpu10I CCTNAGC 2 cut(s) 83, 101
Bse1I ACTGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 222
BshNI GGYRCC 2 cut(s) 23, 50
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 25, 52
BspMI ACCTGC 1 cut(s) 163
BspT107I GGYRCC 2 cut(s) 23, 50
BspTI CTTAAG 1 cut(s) 116
BsrI ACTGG 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 39, 83, 101
BstF5I GGATG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 155, 164
BstNSI RCATGY 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 51
CviAII CATG 1 cut(s) 212
CviJI RGCY 5 cut(s) 82, 100, 115, 227, 269
CviKI_1 RGCY 5 cut(s) 82, 100, 115, 227, 269
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 3 cut(s) 39, 83, 101
FaeI CATG 1 cut(s) 215
FaiI YATR 1 cut(s) 213
FalI AAGNNNNNCTT 4 cut(s) 142, 174, 181, 213
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 291
Hin1II CATG 1 cut(s) 215
HindIII AAGCTT 2 cut(s) 98, 113
HpyAV CCTTC 3 cut(s) 14, 133, 243
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 164
HpyF3I CTNAG 3 cut(s) 39, 83, 101
Hsp92II CATG 1 cut(s) 215
KpnI GGTACC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 4 cut(s) 25, 26, 168, 255
Lsp1109I GCAGC 1 cut(s) 181
MfeI CAATTG 1 cut(s) 65
MluCI AATT 1 cut(s) 65
MnlI CCTC 4 cut(s) 37, 120, 240, 274
MseI TTAA 2 cut(s) 96, 117
MspCI CTTAAG 1 cut(s) 116
MunI CAATTG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 155, 164
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 2 cut(s) 25, 52
NspI RCATGY 1 cut(s) 215
PkrI GCNGC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 25, 52
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 96, 117
SatI GCNGC 1 cut(s) 195
SetI ASST 9 cut(s) 29, 84, 96, 102, 117, 157, 235, 251, 271
SgeI CNNG 9 cut(s) 24, 53, 67, 162, 167, 201, 224, 258, 282
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 65
TasI AATT 1 cut(s) 65
Tru1I TTAA 2 cut(s) 96, 117
Tru9I TTAA 2 cut(s) 96, 117
TscAI CASTG 1 cut(s) 19
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 116
XceI RCATGY 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.