Rmu_sc0028722.1_g000001

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028722.1
OG0000297
Physical Location & Seq
Forward (+)
1183 .. 1845
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028722.1_g000001.1.cds

Sequence Viewer

Length: 663 bp
atggaaaccacagagctcactcacttcactcacaaaacaaccatcacaatggagaagggaaggttaatccgtctcaacgatcactgggtctccatcgctatagacaatcttgattcttttggggatgttggctacctagacttcaggtttctcgatcaactcttaccccactgctccaaagatcagttgattcacatcgagaagagcacaatagatgtagacctgactccgatcaccgataagctgtggaagaggttctttgagagagactttggtggcagaaccaccgatgaggtgatccagaagatgaagatcaagaaaatgagtttcaagtggtcggagttgtacgaggccaagtcgaagaggatggaagaggatgagaaagaagtaggtgaaaggttaaagaagttgtatgagaaagaagctgctcggaaacaaagccggcaagttaaggtgttggacaaggttccaccttcttcgtcaagcaacaaaagaactgggtccaagaaagagagcaagctgatgagcaaattaaggaaacagcatctgaattgtctggaagtgagaaacaatgaagctatgaagatgaagagaactgctcccaagtgttctggtctcatcaggaagccaagaacgagtattaaagctatgaacgtcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

220

Amino Acids

25.82

Weight (kDa)

9.7

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 219
AclWI GGATC 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 127
AfaI GTAC 1 cut(s) 347
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 6 cut(s) 16, 244, 425, 520, 578, 647
AluI AGCT 6 cut(s) 16, 244, 425, 520, 578, 647
Alw21I GWGCWC 2 cut(s) 18, 209
Alw26I GTCTC 4 cut(s) 77, 94, 261, 620
AlwI GGATC 1 cut(s) 292
AlwNI CAGNNNCTG 1 cut(s) 547
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 3 cut(s) 226, 307, 404
AvaII GGWCC 1 cut(s) 501
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 18, 209
BbvI GCAGC 1 cut(s) 412
BccI CCATC 3 cut(s) 50, 101, 361
BcoDI GTCTC 4 cut(s) 77, 94, 261, 620
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 2 cut(s) 468, 502
BmrI ACTGGG 2 cut(s) 94, 507
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 2 cut(s) 94, 507
BplI GAGNNNNNCTC 2 cut(s) 583, 615
BsaBI GATNNNNATC 2 cut(s) 194, 311
BsaI GGTCTC 2 cut(s) 94, 620
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 441
Bse1I ACTGG 2 cut(s) 89, 502
Bse8I GATNNNNATC 2 cut(s) 194, 311
BseGI GGATG 3 cut(s) 130, 372, 382
BseJI GATNNNNATC 2 cut(s) 194, 311
BseNI ACTGG 2 cut(s) 89, 502
BseXI GCAGC 1 cut(s) 412
BshFI GGCC 1 cut(s) 353
BsiHKAI GWGCWC 2 cut(s) 18, 209
BsiSI CCGG 1 cut(s) 442
BsmAI GTCTC 4 cut(s) 77, 94, 261, 620
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 353
Bso31I GGTCTC 2 cut(s) 94, 620
Bsp1286I GDGCHC 2 cut(s) 18, 209
Bsp143I GATC 6 cut(s) 79, 154, 181, 231, 297, 312
BspANI GGCC 1 cut(s) 353
BspLI GGNNCC 2 cut(s) 468, 502
BspPI GGATC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 197
BspTNI GGTCTC 2 cut(s) 94, 620
BsrFI RCCGGY 1 cut(s) 441
BsrI ACTGG 2 cut(s) 89, 502
BssAI RCCGGY 1 cut(s) 441
BssMI GATC 6 cut(s) 79, 154, 181, 231, 297, 312
Bst6I CTCTTC 5 cut(s) 197, 245, 356, 366, 584
BstC8I GCNNGC 2 cut(s) 443, 518
BstF5I GGATG 3 cut(s) 130, 372, 382
BstKTI GATC 6 cut(s) 82, 157, 184, 234, 300, 315
BstMAI GTCTC 4 cut(s) 77, 94, 261, 620
BstMBI GATC 6 cut(s) 79, 154, 181, 231, 297, 312
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 412
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 3 cut(s) 130, 372, 382
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 82, 169
Cac8I GCNNGC 2 cut(s) 443, 518
CaiI CAGNNNCTG 1 cut(s) 547
Cfr10I RCCGGY 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 1 cut(s) 346
CviQI GTAC 1 cut(s) 346
DpnI GATC 6 cut(s) 81, 156, 183, 233, 299, 314
DpnII GATC 6 cut(s) 79, 154, 181, 231, 297, 312
Eam1104I CTCTTC 5 cut(s) 197, 245, 356, 366, 584
EarI CTCTTC 5 cut(s) 197, 245, 356, 366, 584
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 2 cut(s) 94, 620
Eco47I GGWCC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 4 cut(s) 101, 414, 581, 650
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 3 cut(s) 137, 379, 389
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 442
HinfI GANTC 3 cut(s) 113, 190, 226
HpaII CCGG 1 cut(s) 442
HphI GGTGA 3 cut(s) 226, 307, 404
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 231, 340, 432, 549
Hpy188III TCNNGA 7 cut(s) 110, 152, 199, 301, 316, 557, 622
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 49, 54, 483
HpyCH4IV ACGT 1 cut(s) 654
HpySE526I ACGT 1 cut(s) 654
KroI GCCGGC 1 cut(s) 441
KroNI GCCGGC 1 cut(s) 443
Kzo9I GATC 6 cut(s) 79, 154, 181, 231, 297, 312
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 179, 604
LpnPI CCDG 9 cut(s) 70, 130, 236, 314, 455, 483, 542, 597, 607
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 553
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 654
MalI GATC 6 cut(s) 81, 156, 183, 233, 299, 314
MboI GATC 6 cut(s) 79, 154, 181, 231, 297, 312
MboII GAAGA 9 cut(s) 214, 262, 316, 322, 373, 383, 468, 595, 601
MhlI GDGCHC 2 cut(s) 18, 209
MluCI AATT 2 cut(s) 530, 550
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 2 cut(s) 318, 438
MnlI CCTC 5 cut(s) 246, 286, 343, 357, 367
MroNI GCCGGC 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 5 cut(s) 65, 401, 450, 533, 642
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 442
NaeI GCCGGC 1 cut(s) 443
NdeII GATC 6 cut(s) 79, 154, 181, 231, 297, 312
NgoMIV GCCGGC 1 cut(s) 441
NlaIV GGNNCC 2 cut(s) 468, 502
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 113, 190
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 468, 502
PspPI GGNCC 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 547
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 5 cut(s) 65, 401, 450, 533, 642
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 6 cut(s) 79, 154, 181, 231, 297, 312
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 1 cut(s) 220
SduI GDGCHC 2 cut(s) 18, 209
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 2 cut(s) 530, 550
SspMI CTAG 1 cut(s) 137
SstI GAGCTC 1 cut(s) 18
TaiI ACGT 1 cut(s) 657
TaqI TCGA 3 cut(s) 153, 198, 359
TasI AATT 2 cut(s) 530, 550
TfiI GAWTC 2 cut(s) 113, 190
Tru1I TTAA 5 cut(s) 65, 401, 450, 533, 642
Tru9I TTAA 5 cut(s) 65, 401, 450, 533, 642
TscAI CASTG 2 cut(s) 89, 176
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 4 cut(s) 323, 588, 596, 602
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 2 cut(s) 89, 176
VpaK11BI GGWCC 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.