Rorug02G0422000

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000297
Physical Location & Seq
Forward (+)
54227913 .. 54228176
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0422000.1

Sequence Viewer

Length: 264 bp
ATGGCCGATGGTGGACATTTCCTTCACAGAGTCATGTCATACCTCGTCAATGAGCTTCTGGTCGATAGCCTCGCCAACAGCAGATCATTCCATGGGTTTGCTCTGAGGACATCAAAGCAGATGGATGAGCTTTCAAATTTGGTTGCCATGAAGAAGGAACAACTTGCCGAGCAGATGAAGGATATATCCAGTTTGGTTGTCATCACACCATCTGTATACATCCTTCTTGATATGCTGTCTTTGAGAGCTATTGAGAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

87

Amino Acids

9.85

Weight (kDa)

6.82

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 136
AgsI TTSAA 1 cut(s) 135
AluBI AGCT 3 cut(s) 55, 130, 248
AluI AGCT 3 cut(s) 55, 130, 248
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 207, 239
BccI CCATC 3 cut(s) 2, 115, 217
BsaJI CCNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 2 cut(s) 130, 219
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 189
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 83
Bsp19I CCATGG 1 cut(s) 91
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 83
BssNAI GTATAC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 91
Bst1107I GTATAC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 130, 219
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstZ17I GTATAC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 130, 219
CviAII CATG 3 cut(s) 34, 92, 148
CviJI RGCY 5 cut(s) 5, 55, 69, 130, 248
CviKI_1 RGCY 5 cut(s) 5, 55, 69, 130, 248
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 37, 95, 151
FaiI YATR 7 cut(s) 35, 40, 93, 149, 185, 217, 233
FatI CATG 3 cut(s) 33, 91, 147
FblI GTMKAC 1 cut(s) 216
FokI GGATG 2 cut(s) 137, 206
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 3 cut(s) 37, 95, 151
HinfI GANTC 1 cut(s) 30
Hpy166II GTNNAC 2 cut(s) 14, 217
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 2 cut(s) 14, 217
HpyAV CCTTC 4 cut(s) 32, 148, 172, 233
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 3 cut(s) 37, 95, 151
Kzo9I GATC 1 cut(s) 83
LpnPI CCDG 2 cut(s) 44, 202
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 1 cut(s) 163
MluCI AATT 1 cut(s) 136
MlyI GAGTC 1 cut(s) 39
MnlI CCTC 3 cut(s) 53, 80, 99
NcoI CCATGG 1 cut(s) 91
NdeII GATC 1 cut(s) 83
NlaIII CATG 3 cut(s) 37, 95, 151
NmeAIII GCCGAG 1 cut(s) 193
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 1 cut(s) 39
SetI ASST 4 cut(s) 45, 57, 132, 250
Sse9I AATT 1 cut(s) 136
StyI CCWWGG 1 cut(s) 91
TaqI TCGA 1 cut(s) 63
TasI AATT 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 164, 191
XapI RAATTY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.