RLG00000019670

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000297
Physical Location & Seq
Forward (+)
55216056 .. 55216724
669 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019670

Sequence Viewer

Length: 612 bp
ATGGAAACCAAGGCCCTCACTCACTTCACTAGCAAAACAATCATCACAATGGAGAAGGGAAAGTTGATACGTCTCGATGATCGTTGGGTCTCCATCGCAATAGACAATCTAGACTCTTTCGGGGATGTTAAGTATCTAGACTTCAAGTTTCTCTATCAGGTCTTACCCCACTGCTCCGAAGACCAGTTGATTCACATCGAGAAGAGCACGAAAGATACAGACCTGACTCCGATCACTGATAAGCTCTGGAAGAAGATTTTCGAGAGAGAGTTCAGTGTCAAAGCCACAGATAAGACCAAGTTGAAGAGAGTGGAAGAGCATGAGAAACAAGTGGGAGAAAGATTGAAGAGGCTGTATCAGAAAGAAGCTGCCAGGAAACCAGGGCGGCAAGTTAGGGTTTTGGACAAGCTTCCGCCTTCTTCGTCAAGCAATAAAAGAAGTGGTTCCACCAAAGAGACCAAACTGATGAAAAAAGTGAGAAAAGAGTATTACAACTGTCTAGAGGTGAAAAATATTGAAGCTATGAAGATGAAGGGAAGTACCAAGTGTTCTAGTCTCATCAAAAAGCCAAGAAACGACTATTCAAGCTATGAACGTCTTTTGAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

204

Amino Acids

23.87

Weight (kDa)

9.69

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 41 - 123 2.3e-10 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 385, 413
AfaI GTAC 1 cut(s) 541
AgsI TTSAA 6 cut(s) 145, 304, 346, 518, 585, 604
AjnI CCWGG 2 cut(s) 371, 379
AluBI AGCT 5 cut(s) 244, 368, 409, 521, 588
AluI AGCT 5 cut(s) 244, 368, 409, 521, 588
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 4 cut(s) 77, 94, 449, 560
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 368
Asp700I GAANNNNTTC 2 cut(s) 257, 442
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 517
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 355
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 373, 381
BcoDI GTCTC 4 cut(s) 77, 94, 449, 560
BfaI CTAG 5 cut(s) 30, 110, 137, 500, 552
BisI GCNGC 2 cut(s) 369, 386
BlsI GCNGC 2 cut(s) 370, 387
Bme1390I CCNGG 2 cut(s) 373, 381
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 2 cut(s) 373, 381
BpiI GAAGAC 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 194
BsaI GGTCTC 2 cut(s) 94, 449
BsaJI CCNNGG 2 cut(s) 9, 380
Bse1I ACTGG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 2 cut(s) 373, 381
BseDI CCNNGG 2 cut(s) 9, 380
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 194
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 209
BsmAI GTCTC 4 cut(s) 77, 94, 449, 560
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 14
Bso31I GGTCTC 2 cut(s) 94, 449
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 79, 231
BspACI CCGC 2 cut(s) 385, 413
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 445
BspQI GCTCTTC 2 cut(s) 197, 309
BspTNI GGTCTC 2 cut(s) 94, 449
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 9, 380
BssMI GATC 2 cut(s) 79, 231
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 373, 381
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 4 cut(s) 197, 299, 309, 341
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 2 cut(s) 82, 234
BstMAI GTCTC 4 cut(s) 77, 94, 449, 560
BstMBI GATC 2 cut(s) 79, 231
BstNI CCWGG 2 cut(s) 373, 381
BstSCI CCNGG 2 cut(s) 371, 379
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 3 cut(s) 169, 234, 280
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 540
CviAII CATG 1 cut(s) 320
CviJI RGCY 9 cut(s) 14, 244, 284, 352, 368, 409, 521, 568, 588
CviKI_1 RGCY 9 cut(s) 14, 244, 284, 352, 368, 409, 521, 568, 588
CviQI GTAC 1 cut(s) 540
DpnI GATC 2 cut(s) 81, 233
DpnII GATC 2 cut(s) 79, 231
Eam1104I CTCTTC 4 cut(s) 197, 299, 309, 341
EarI CTCTTC 4 cut(s) 197, 299, 309, 341
EciI GGCGGA 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 94, 449
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 371, 379
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 323
FaiI YATR 3 cut(s) 321, 524, 591
FatI CATG 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 369, 386
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 369, 386
FspBI CTAG 5 cut(s) 30, 110, 137, 500, 552
GluI GCNGC 2 cut(s) 369, 386
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 3 cut(s) 113, 190, 226
HphI GGTGA 1 cut(s) 517
Hpy188I TCNGA 3 cut(s) 178, 231, 360
Hpy188III TCNNGA 7 cut(s) 74, 110, 137, 199, 247, 262, 500
HpyAV CCTTC 3 cut(s) 49, 426, 526
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4IV ACGT 2 cut(s) 70, 595
HpySE526I ACGT 2 cut(s) 70, 595
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 2 cut(s) 79, 231
LguI GCTCTTC 2 cut(s) 197, 309
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 8 cut(s) 143, 197, 232, 236, 358, 366, 385, 393
Lsp1109I GCAGC 1 cut(s) 355
MaeI CTAG 5 cut(s) 30, 110, 137, 500, 552
MaeII ACGT 2 cut(s) 70, 595
MalI GATC 2 cut(s) 81, 233
MboI GATC 2 cut(s) 79, 231
MboII GAAGA 9 cut(s) 191, 214, 262, 265, 316, 326, 358, 411, 538
MhlI GDGCHC 1 cut(s) 209
MlyI GAGTC 2 cut(s) 107, 220
MnlI CCTC 3 cut(s) 26, 342, 496
MroXI GAANNNNTTC 2 cut(s) 257, 442
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 373, 381
MvaI CCWGG 2 cut(s) 373, 381
NdeII GATC 2 cut(s) 79, 231
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 445
PciSI GCTCTTC 2 cut(s) 197, 309
PdmI GAANNNNTTC 2 cut(s) 257, 442
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 370, 387
PleI GAGTC 2 cut(s) 107, 220
PpsI GAGTC 2 cut(s) 107, 220
Psp6I CCWGG 2 cut(s) 371, 379
PspGI CCWGG 2 cut(s) 371, 379
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 1 cut(s) 13
PsrI GAACNNNNNNTAC 2 cut(s) 532, 564
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
RseI CAYNNNNRTG 1 cut(s) 47
SapI GCTCTTC 2 cut(s) 197, 309
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 369, 386
Sau3AI GATC 2 cut(s) 79, 231
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 2 cut(s) 107, 220
ScrFI CCNGG 2 cut(s) 373, 381
SduI GDGCHC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 2 cut(s) 385, 413
SspI AATATT 1 cut(s) 514
SspMI CTAG 5 cut(s) 30, 110, 137, 500, 552
StyD4I CCNGG 2 cut(s) 371, 379
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 497
TaiI ACGT 2 cut(s) 73, 598
TaqI TCGA 3 cut(s) 75, 198, 261
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 3 cut(s) 176, 241, 280
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 4 cut(s) 482, 539, 545, 606
TspRI CASTG 3 cut(s) 176, 241, 280
XbaI TCTAGA 3 cut(s) 109, 136, 499
XmnI GAANNNNTTC 2 cut(s) 257, 442
XspI CTAG 5 cut(s) 30, 110, 137, 500, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.