RLG00000017036

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000297
Physical Location & Seq
Forward (+)
12317580 .. 12322693
5114 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017036

Sequence Viewer

Length: 774 bp
ATGGAAACCGCAGAGCTCACTCACTTCACTCACAAAACAACCATCACGATGGAGAAGGGAAGGTTAATCCGTCTCAACGATCACTGGGTCTCCATCGCTATAGACAATCTTGATTCTTTTGGGGATGTTGGCTACCTAGACTTCAGGTTTCTCGATCAACTCTTACCCCACTGCTCCAAAGATCAGTTGATTCACATCGAGAAGAGCACAAAAGATGTAGACCTGACTCCGATCACCGATAAGCTGTGGAAGAGGTTCTTCGAGAGAGACTTCGGTGGCAAAGCCACCAGTGAGGTGATCCAGAAGATGAAGATCAAGAAAATGAGTTTCAAGTGGTTGGAGTTGTACGAGGCCAAGTCGAAGAGGATGGAAGAGGATGAGAAAGAAGTAGGCGGAAGGTTAAAGAAGCTGTATGAGAAAGAAGCTGCTCGGAAACAAAGCCGGCAAGTTAAGGTGTTGGACAAGCTGTGGACAAAGAATGATAGATTCCATGTTTTGTCCTTCAACTTCCGCGATGAGGTCTTCCATGTGATACCATTACCAGAGAGCAGTACTAGTCTAACAGATCTCTTTTCTTGGAAAAATTCATTGGCATTTATACGAGGTCATGAACAAGAACTAGACTATGAGCTTTGGATGATGACTGAGGAGCCTTCTGGTACTACTAAACAAATGCCTAGGGCTAAACAGTTTATCGTTAAATTTTCACCACTGGCAACATGTTTCTTAGGATCTTCGAAAAATGAATGTCTTTTAGAGGCAGATATATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

258

Amino Acids

30.26

Weight (kDa)

7.1

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 41 - 149 3e-22 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 513
AciI CCGC 3 cut(s) 9, 393, 511
AclWI GGATC 2 cut(s) 292, 739
AcsI RAATTY 2 cut(s) 583, 701
AcuI CTGAAG 1 cut(s) 127
AfaI GTAC 3 cut(s) 347, 553, 661
AfiI CCNNNNNNNGG 1 cut(s) 517
AflIII ACRYGT 1 cut(s) 719
AgsI TTSAA 2 cut(s) 331, 505
AhlI ACTAGT 1 cut(s) 554
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 6 cut(s) 16, 244, 409, 425, 466, 631
AluI AGCT 6 cut(s) 16, 244, 409, 425, 466, 631
Alw21I GWGCWC 2 cut(s) 18, 209
Alw26I GTCTC 3 cut(s) 77, 94, 261
AlwI GGATC 2 cut(s) 292, 739
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 2 cut(s) 583, 701
Asp700I GAANNNNTTC 1 cut(s) 254
AspA2I CCTAGG 1 cut(s) 677
AsuHPI GGTGA 3 cut(s) 226, 307, 699
AsuII TTCGAA 1 cut(s) 737
AvrII CCTAGG 1 cut(s) 677
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 514
Bbv12I GWGCWC 2 cut(s) 18, 209
BbvI GCAGC 1 cut(s) 412
BccI CCATC 4 cut(s) 43, 50, 101, 361
BcoDI GTCTC 3 cut(s) 77, 94, 261
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 4 cut(s) 137, 555, 620, 678
BfmI CTRYAG 1 cut(s) 99
BglII AGATCT 1 cut(s) 565
BisI GCNGC 1 cut(s) 426
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 1 cut(s) 427
BmcAI AGTACT 1 cut(s) 553
BmiI GGNNCC 1 cut(s) 651
BmrI ACTGGG 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 514
Bpu14I TTCGAA 1 cut(s) 737
BsaBI GATNNNNATC 2 cut(s) 194, 311
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 677
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse118I RCCGGY 1 cut(s) 441
Bse1I ACTGG 3 cut(s) 89, 288, 717
Bse8I GATNNNNATC 2 cut(s) 194, 311
BseDI CCNNGG 1 cut(s) 677
BseGI GGATG 4 cut(s) 130, 372, 382, 642
BseJI GATNNNNATC 2 cut(s) 194, 311
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 3 cut(s) 89, 288, 717
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 1 cut(s) 412
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 1 cut(s) 353
BsiHKAI GWGCWC 2 cut(s) 18, 209
BsiSI CCGG 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 3 cut(s) 77, 94, 261
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 353
Bso31I GGTCTC 1 cut(s) 94
Bsp119I TTCGAA 1 cut(s) 737
Bsp1286I GDGCHC 2 cut(s) 18, 209
Bsp143I GATC 8 cut(s) 79, 154, 181, 231, 297, 312, 565, 731
BspACI CCGC 3 cut(s) 9, 393, 511
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 637
BspFNI CGCG 1 cut(s) 513
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 651
BspPI GGATC 2 cut(s) 292, 739
BspQI GCTCTTC 1 cut(s) 197
BspT104I TTCGAA 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 441
BsrI ACTGG 3 cut(s) 89, 288, 717
BssAI RCCGGY 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 8 cut(s) 79, 154, 181, 231, 297, 312, 565, 731
BssT1I CCWWGG 1 cut(s) 677
Bst4CI ACNGT 1 cut(s) 690
Bst6I CTCTTC 4 cut(s) 197, 245, 356, 366
BstBI TTCGAA 1 cut(s) 737
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 2 cut(s) 645, 727
BstF5I GGATG 4 cut(s) 130, 372, 382, 642
BstFNI CGCG 1 cut(s) 513
BstKTI GATC 8 cut(s) 82, 157, 184, 234, 300, 315, 568, 734
BstMAI GTCTC 3 cut(s) 77, 94, 261
BstMBI GATC 8 cut(s) 79, 154, 181, 231, 297, 312, 565, 731
BstNSI RCATGY 1 cut(s) 723
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 514
BstX2I RGATCY 2 cut(s) 565, 731
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 2 cut(s) 565, 731
BsuRI GGCC 1 cut(s) 353
BtgZI GCGATG 2 cut(s) 79, 528
BtsCI GGATG 4 cut(s) 130, 372, 382, 642
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 4 cut(s) 82, 169, 295, 710
Cac8I GCNNGC 1 cut(s) 443
CciI TCATGA 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 441
Csp6I GTAC 3 cut(s) 346, 552, 660
CviAII CATG 4 cut(s) 491, 527, 608, 720
CviQI GTAC 3 cut(s) 346, 552, 660
DdeI CTNAG 2 cut(s) 645, 727
DpnI GATC 8 cut(s) 81, 156, 183, 233, 299, 314, 567, 733
DpnII GATC 8 cut(s) 79, 154, 181, 231, 297, 312, 565, 731
Eam1104I CTCTTC 4 cut(s) 197, 245, 356, 366
EarI CTCTTC 4 cut(s) 197, 245, 356, 366
EciI GGCGGA 1 cut(s) 408
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 677
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 677
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 677
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 4 cut(s) 494, 530, 611, 723
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 4 cut(s) 490, 526, 607, 719
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 4 cut(s) 137, 379, 389, 649
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 4 cut(s) 137, 555, 620, 678
GluI GCNGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 442
Hin1II CATG 4 cut(s) 494, 530, 611, 723
HinfI GANTC 4 cut(s) 113, 190, 226, 486
HpaII CCGG 1 cut(s) 442
HphI GGTGA 3 cut(s) 226, 307, 699
Hpy166II GTNNAC 2 cut(s) 220, 471
Hpy188I TCNGA 2 cut(s) 231, 432
Hpy188III TCNNGA 8 cut(s) 46, 110, 152, 199, 262, 301, 316, 608
Hpy8I GTNNAC 2 cut(s) 220, 471
HpyAV CCTTC 5 cut(s) 49, 54, 390, 511, 663
HpyCH4III ACNGT 1 cut(s) 690
HpyF3I CTNAG 2 cut(s) 645, 727
Hsp92II CATG 4 cut(s) 494, 530, 611, 723
KroI GCCGGC 1 cut(s) 441
KroNI GCCGGC 1 cut(s) 443
Kzo9I GATC 8 cut(s) 79, 154, 181, 231, 297, 312, 565, 731
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 179, 649
LpnPI CCDG 9 cut(s) 70, 130, 236, 301, 314, 455, 555, 642, 698
Lsp1109I GCAGC 1 cut(s) 412
MaeI CTAG 4 cut(s) 137, 555, 620, 678
MalI GATC 8 cut(s) 81, 156, 183, 233, 299, 314, 567, 733
MboI GATC 8 cut(s) 79, 154, 181, 231, 297, 312, 565, 731
MboII GAAGA 9 cut(s) 214, 250, 262, 316, 322, 373, 383, 514, 726
MflI RGATCY 2 cut(s) 565, 731
MhlI GDGCHC 2 cut(s) 18, 209
MluCI AATT 2 cut(s) 583, 701
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 2 cut(s) 318, 438
MnlI CCTC 9 cut(s) 246, 286, 343, 357, 367, 511, 596, 640, 751
MroNI GCCGGC 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 5 cut(s) 65, 401, 450, 699, 772
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 442
MvnI CGCG 1 cut(s) 513
NaeI GCCGGC 1 cut(s) 443
NdeII GATC 8 cut(s) 79, 154, 181, 231, 297, 312, 565, 731
NgoMIV GCCGGC 1 cut(s) 441
NlaIII CATG 4 cut(s) 494, 530, 611, 723
NlaIV GGNNCC 1 cut(s) 651
NspI RCATGY 1 cut(s) 723
NspV TTCGAA 1 cut(s) 737
PagI TCATGA 1 cut(s) 607
PciI ACATGT 1 cut(s) 719
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 3 cut(s) 113, 190, 486
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PscI ACATGT 1 cut(s) 719
Psp124BI GAGCTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 651
PsuI RGATCY 2 cut(s) 565, 731
RsaI GTAC 3 cut(s) 347, 553, 661
RsaNI GTAC 3 cut(s) 346, 552, 660
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 5 cut(s) 65, 401, 450, 699, 772
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 8 cut(s) 79, 154, 181, 231, 297, 312, 565, 731
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 220
SduI GDGCHC 2 cut(s) 18, 209
SfcI CTRYAG 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 47
SpeI ACTAGT 1 cut(s) 554
Sse9I AATT 2 cut(s) 583, 701
SsiI CCGC 3 cut(s) 9, 393, 511
SspMI CTAG 4 cut(s) 137, 555, 620, 678
SstI GAGCTC 1 cut(s) 18
StyI CCWWGG 1 cut(s) 677
TaaI ACNGT 1 cut(s) 690
TaqI TCGA 5 cut(s) 153, 198, 261, 359, 737
TasI AATT 2 cut(s) 583, 701
TatI WGTACW 1 cut(s) 551
TfiI GAWTC 3 cut(s) 113, 190, 486
Tru1I TTAA 5 cut(s) 65, 401, 450, 699, 772
Tru9I TTAA 5 cut(s) 65, 401, 450, 699, 772
TscAI CASTG 4 cut(s) 89, 176, 295, 717
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 4 cut(s) 323, 576, 624, 759
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 4 cut(s) 89, 176, 295, 717
XapI RAATTY 2 cut(s) 583, 701
XceI RCATGY 1 cut(s) 723
XmaJI CCTAGG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 4 cut(s) 137, 555, 620, 678
ZrmI AGTACT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.