Rorug02G0422200

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000297
Physical Location & Seq
Reverse (-)
54246130 .. 54246814
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0422200.1

Sequence Viewer

Length: 381 bp
ATGGAGAGTGATTTGATTTCGGAGATGAAAAAAGAGATTGAGAATCGATTGCCGGAGAAGAAACCGATCCCGCCACCGGTGACTACTGACTGCGACGCCGACGGCTCAGCAGATTTGGAGTGGGATCTCTCTAAAGATTCCGATTCCGATGGCGATTCTAACCGGGGAGAGGTTCCGTCTCAGGAAGAATGGAAGAATCAATGTCAAATTCTTGAGAAAGAGCTCGAGATCGCTCCTGACTCAGAAAAGGATTCCGGTCTGGTTCGCAGGAGAGATGGTGAAATGGAGATGCCGGTCGATTCCGATTCTTCTGATGGCATCGCTGGTGACTTCGGCGGCAAGCTGCGGGGAAGATTCGAAAAAACCGGCGGCAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

126

Amino Acids

13.93

Weight (kDa)

4.33

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 71, 336, 346, 369
AclWI GGATC 2 cut(s) 61, 132
AcsI RAATTY 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 76, 169
AgeI ACCGGT 1 cut(s) 76
AluBI AGCT 2 cut(s) 223, 343
AluI AGCT 2 cut(s) 223, 343
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 2 cut(s) 61, 132
Ama87I CYCGRG 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 1 cut(s) 207
AsiGI ACCGGT 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 91, 290, 338
AsuII TTCGAA 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 224
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 330
BccI CCATC 3 cut(s) 143, 269, 308
BceAI ACGGC 1 cut(s) 118
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 379
BisI GCNGC 3 cut(s) 337, 344, 370
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 3 cut(s) 338, 345, 371
Bme1390I CCNGG 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 279, 327
Bpu1102I GCTNAGC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 164
Bsa29I ATCGAT 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 2 cut(s) 76, 254
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 169
Bse118I RCCGGY 3 cut(s) 76, 292, 365
BseCI ATCGAT 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 76, 169
BseMII CTCAG 3 cut(s) 120, 194, 255
BseXI GCAGC 1 cut(s) 330
Bsh1285I CGRYCG 1 cut(s) 297
BshTI ACCGGT 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 6 cut(s) 53, 77, 163, 255, 293, 366
BslI CCNNNNNNNGG 2 cut(s) 76, 169
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 3 cut(s) 66, 124, 228
Bsp1720I GCTNAGC 1 cut(s) 106
BspACI CCGC 4 cut(s) 71, 336, 346, 369
BspCNI CTCAG 3 cut(s) 119, 193, 254
BspDI ATCGAT 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 2 cut(s) 61, 132
BspT104I TTCGAA 1 cut(s) 357
BsrFI RCCGGY 3 cut(s) 76, 292, 365
BssAI RCCGGY 3 cut(s) 76, 292, 365
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 3 cut(s) 66, 124, 228
BssNI GRCGYC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 3 cut(s) 106, 180, 241
BstKTI GATC 3 cut(s) 69, 127, 231
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 3 cut(s) 66, 124, 228
BstMCI CGRYCG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 46
BsuTUI ATCGAT 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 341
Cfr10I RCCGGY 3 cut(s) 76, 292, 365
ClaI ATCGAT 1 cut(s) 46
CseI GACGC 1 cut(s) 104
CspAI ACCGGT 1 cut(s) 76
CviJI RGCY 3 cut(s) 105, 223, 343
CviKI_1 RGCY 3 cut(s) 105, 223, 343
DdeI CTNAG 3 cut(s) 106, 180, 241
DpnI GATC 3 cut(s) 68, 126, 230
DpnII GATC 3 cut(s) 66, 124, 228
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 183
FauI CCCGC 2 cut(s) 78, 339
Fnu4HI GCNGC 3 cut(s) 337, 344, 370
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 3 cut(s) 337, 344, 370
FspBI CTAG 1 cut(s) 379
GluI GCNGC 3 cut(s) 337, 344, 370
HapII CCGG 6 cut(s) 53, 77, 163, 255, 293, 366
HgaI GACGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 96
HpaII CCGG 6 cut(s) 53, 77, 163, 255, 293, 366
HphI GGTGA 3 cut(s) 91, 290, 338
Hpy188I TCNGA 6 cut(s) 22, 142, 148, 244, 304, 313
Hpy188III TCNNGA 4 cut(s) 182, 212, 226, 236
Hpy99I CGWCG 2 cut(s) 98, 104
HpyF3I CTNAG 3 cut(s) 106, 180, 241
Hsp92I GRCGYC 1 cut(s) 96
Kzo9I GATC 3 cut(s) 66, 124, 228
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 2 cut(s) 279, 327
MaeI CTAG 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 79, 326
MalI GATC 3 cut(s) 68, 126, 230
MboI GATC 3 cut(s) 66, 124, 228
MboII GAAGA 5 cut(s) 70, 197, 205, 300, 363
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 1 cut(s) 207
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 1 cut(s) 163
MspI CCGG 6 cut(s) 53, 77, 163, 255, 293, 366
MspR9I CCNGG 1 cut(s) 164
NciI CCSGG 1 cut(s) 164
NdeII GATC 3 cut(s) 66, 124, 228
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 2 cut(s) 79, 326
NspV TTCGAA 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 224
PfeI GAWTC 9 cut(s) 43, 137, 143, 155, 196, 251, 299, 305, 354
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 3 cut(s) 338, 345, 371
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 124
SacI GAGCTC 1 cut(s) 225
SatI GCNGC 3 cut(s) 337, 344, 370
Sau3AI GATC 3 cut(s) 66, 124, 228
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 225
SetI ASST 3 cut(s) 174, 225, 345
SfaNI GCATC 2 cut(s) 279, 327
Sfr274I CTCGAG 1 cut(s) 224
SfuI TTCGAA 1 cut(s) 357
SgrAI CRCCGGYG 1 cut(s) 76
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 2 cut(s) 212, 224
SmoI CTYRAG 2 cut(s) 212, 224
Sse9I AATT 1 cut(s) 207
SsiI CCGC 4 cut(s) 71, 336, 346, 369
SspMI CTAG 1 cut(s) 379
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 162
TaqI TCGA 4 cut(s) 46, 225, 297, 357
TasI AATT 1 cut(s) 207
TauI GCSGC 2 cut(s) 339, 372
TfiI GAWTC 9 cut(s) 43, 137, 143, 155, 196, 251, 299, 305, 354
TseFI GTSAC 2 cut(s) 79, 326
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 2 cut(s) 79, 326
TspDTI ATGAA 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 165
XapI RAATTY 1 cut(s) 207
XhoI CTCGAG 1 cut(s) 224
XspI CTAG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.