Rmu_sc0004027.1_g000010

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004027.1
OG0000297
Physical Location & Seq
Reverse (-)
16485 .. 17147
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004027.1_g000010.1.cds

Sequence Viewer

Length: 663 bp
atggaaaccacagacctcactcacttcactcacaaaagaaccatcacaatggagaagggaaggttaatccgtctgaatgatcactgggtctccgttgctatagacaatcttgattcttttggggatgttgggtacctagatttcaggtttctcgatcaactcttaccccactgctccaaagaccagttgattcacatcgagaagtgcacaaaagatacagacttgactccgatcaccgataagctttggaagaagttatttgagagagacttcggtggcaaagccactgatgaggtcatcgagaagatgaagatcaagaaagtgagcttcaagtggtcggagttgtaccaggaaaagtccaagagactggaaaaggctgagaaagaagttggtgtaaggttgaagaagctgtacgagaaagaagccgctcggaaacaaagccggcaggttaaggtgttggacatggttccaccttcttcgtcaagcaacaaaagaactgggtccaagaaagagagcaaactgatgagcagattgaggaaacaacatctgaattgtctggaaatgagaaatattcaagctatgaagatgaagagaactgctgccaactattctggtctcatcaacaggccaagaacgactattcgacctatgaacgtcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

220

Amino Acids

25.83

Weight (kDa)

9.86

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AccBSI CCGCTC 1 cut(s) 428
AciI CCGC 1 cut(s) 426
AfaI GTAC 3 cut(s) 134, 347, 413
AgsI TTSAA 3 cut(s) 331, 403, 575
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 4 cut(s) 244, 327, 409, 578
AluI AGCT 4 cut(s) 244, 327, 409, 578
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 4 cut(s) 94, 261, 358, 620
Alw44I GTGCAC 1 cut(s) 205
AoxI GGCC 1 cut(s) 626
ApaLI GTGCAC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 599
Asp718I GGTACC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 1 cut(s) 501
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 395, 427
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 586
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 4 cut(s) 94, 261, 358, 620
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 2 cut(s) 426, 600
BlsI GCNGC 2 cut(s) 427, 601
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 3 cut(s) 134, 468, 502
BmrFI CCNGG 1 cut(s) 350
BmrI ACTGGG 2 cut(s) 94, 507
BmuI ACTGGG 2 cut(s) 94, 507
BsaBI GATNNNNATC 2 cut(s) 194, 311
BsaI GGTCTC 2 cut(s) 94, 620
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 441
Bse1I ACTGG 4 cut(s) 89, 184, 372, 502
Bse8I GATNNNNATC 2 cut(s) 194, 311
BseBI CCWGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 2 cut(s) 194, 311
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 4 cut(s) 89, 184, 372, 502
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 1 cut(s) 586
BshFI GGCC 1 cut(s) 628
BshNI GGYRCC 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 442
BsmAI GTCTC 4 cut(s) 94, 261, 358, 620
BsnI GGCC 1 cut(s) 628
Bso31I GGTCTC 2 cut(s) 94, 620
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 4 cut(s) 79, 154, 231, 312
BspACI CCGC 1 cut(s) 426
BspANI GGCC 1 cut(s) 628
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 134, 468, 502
BspMI ACCTGC 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 132
BspTNI GGTCTC 2 cut(s) 94, 620
BsrBI CCGCTC 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 441
BsrI ACTGG 4 cut(s) 89, 184, 372, 502
BssAI RCCGGY 1 cut(s) 441
BssMI GATC 4 cut(s) 79, 154, 231, 312
Bst2UI CCWGG 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 584
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 4 cut(s) 82, 157, 234, 315
BstMAI GTCTC 4 cut(s) 94, 261, 358, 620
BstMBI GATC 4 cut(s) 79, 154, 231, 312
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 586
BstXI CCANNNNNNTGG 2 cut(s) 49, 367
BsuRI GGCC 1 cut(s) 628
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 3 cut(s) 82, 169, 285
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 443
Cfr10I RCCGGY 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 3 cut(s) 133, 346, 412
CviAII CATG 1 cut(s) 463
CviJI RGCY 9 cut(s) 244, 284, 327, 377, 409, 425, 441, 578, 628
CviKI_1 RGCY 9 cut(s) 244, 284, 327, 377, 409, 425, 441, 578, 628
CviQI GTAC 3 cut(s) 133, 346, 412
DdeI CTNAG 1 cut(s) 378
DpnI GATC 4 cut(s) 81, 156, 233, 314
DpnII GATC 4 cut(s) 79, 154, 231, 312
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
Eco31I GGTCTC 2 cut(s) 94, 620
Eco47I GGWCC 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 466
FaiI YATR 4 cut(s) 101, 464, 581, 650
FatI CATG 1 cut(s) 462
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 426, 600
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 426, 600
FspBI CTAG 1 cut(s) 137
GluI GCNGC 2 cut(s) 426, 600
HaeIII GGCC 1 cut(s) 628
HapII CCGG 1 cut(s) 442
Hin1II CATG 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 3 cut(s) 113, 190, 226
HpaII CCGG 1 cut(s) 442
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 5 cut(s) 75, 231, 340, 432, 549
Hpy188III TCNNGA 6 cut(s) 110, 152, 199, 301, 316, 557
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 3 cut(s) 49, 54, 483
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 1 cut(s) 466
KpnI GGTACC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 441
KroNI GCCGGC 1 cut(s) 443
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 4 cut(s) 79, 154, 231, 312
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 586
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 654
MalI GATC 4 cut(s) 81, 156, 233, 314
MbiI CCGCTC 1 cut(s) 428
MboI GATC 4 cut(s) 79, 154, 231, 312
MboII GAAGA 7 cut(s) 262, 316, 322, 415, 468, 595, 601
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 1 cut(s) 550
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 2 cut(s) 318, 438
MnlI CCTC 3 cut(s) 26, 286, 528
MroNI GCCGGC 1 cut(s) 441
MseI TTAA 2 cut(s) 65, 450
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
NaeI GCCGGC 1 cut(s) 443
NdeII GATC 4 cut(s) 79, 154, 231, 312
NgoMIV GCCGGC 1 cut(s) 441
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 3 cut(s) 134, 468, 502
PdiI GCCGGC 1 cut(s) 443
PfeI GAWTC 2 cut(s) 113, 190
PkrI GCNGC 2 cut(s) 427, 601
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 134, 468, 502
PspPI GGNCC 1 cut(s) 501
RsaI GTAC 3 cut(s) 134, 347, 413
RsaNI GTAC 3 cut(s) 133, 346, 412
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 2 cut(s) 65, 450
SatI GCNGC 2 cut(s) 426, 600
Sau3AI GATC 4 cut(s) 79, 154, 231, 312
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 550
SsiI CCGC 1 cut(s) 426
SspI AATATT 1 cut(s) 571
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 348
TaiI ACGT 1 cut(s) 657
TaqI TCGA 4 cut(s) 153, 198, 300, 643
TasI AATT 1 cut(s) 550
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 2 cut(s) 113, 190
Tru1I TTAA 2 cut(s) 65, 450
Tru9I TTAA 2 cut(s) 65, 450
TscAI CASTG 3 cut(s) 89, 176, 292
TseI GCWGC 1 cut(s) 599
TspDTI ATGAA 3 cut(s) 323, 596, 602
TspGWI ACGGA 2 cut(s) 59, 82
TspRI CASTG 3 cut(s) 89, 176, 292
VneI GTGCAC 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 501
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.