Rorug05G0310900

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000297
Physical Location & Seq
Forward (+)
36561566 .. 36561853
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0310900.1

Sequence Viewer

Length: 288 bp
ATGCCTTCTTCTTCAGTTCACCGACAAGGCGGCAAGTTTCTGAGCGTCGGCCTCGACGAGAAAGATCTCCGATCTGGAGCGGCTGGAGAGAAAGCCTCGACGAGAATAATCTCTGATTTTCTGGTCGGCTGGAGTGCCGGCCTCGACGAGAGTCGCTTCGTCTCTGCCGCCAGAATCGCCACCGTCGCCGCCGACAACTCCTCCTCCGACGCCGAAGCAACATTCAAATCCATAGGCACGCCTTCGTCTCGCTCAAGCCCTTTAATTCCAGGCAGAAAATCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

95

Amino Acids

9.86

Weight (kDa)

9.69

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 80
AciI CCGC 4 cut(s) 30, 80, 168, 189
AcyI GRCGYC 1 cut(s) 210
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 268
Alw26I GTCTC 2 cut(s) 166, 252
AoxI GGCC 2 cut(s) 49, 139
AsuHPI GGTGA 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 166, 252
BglII AGATCT 1 cut(s) 64
BisI GCNGC 4 cut(s) 31, 81, 168, 189
BlsI GCNGC 4 cut(s) 32, 82, 169, 190
Bme1390I CCNGG 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 270
BoxI GACNNNNGTC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpmI CTGGAG 3 cut(s) 96, 105, 151
BpuEI CTTGAG 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 210
BsaXI ACNNNNNCTCC 4 cut(s) 185, 188, 215, 218
Bse118I RCCGGY 1 cut(s) 137
BseBI CCWGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 32
BseRI GAGGAG 2 cut(s) 190, 193
BshFI GGCC 2 cut(s) 51, 141
BsiSI CCGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 166, 252
BsmBI CGTCTC 2 cut(s) 166, 252
BsnI GGCC 2 cut(s) 51, 141
Bsp143I GATC 2 cut(s) 64, 71
BspACI CCGC 4 cut(s) 30, 80, 168, 189
BspANI GGCC 2 cut(s) 51, 141
BspCNI CTCAG 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 2 cut(s) 64, 71
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 139, 239
BstDEI CTNAG 1 cut(s) 41
BstKTI GATC 2 cut(s) 67, 74
BstMAI GTCTC 2 cut(s) 166, 252
BstMBI GATC 2 cut(s) 64, 71
BstMWI GCNNNNNNNGC 2 cut(s) 176, 185
BstNI CCWGG 1 cut(s) 270
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 2 cut(s) 51, 141
Cac8I GCNNGC 2 cut(s) 139, 239
Cfr10I RCCGGY 1 cut(s) 137
CseI GACGC 2 cut(s) 34, 218
CviJI RGCY 6 cut(s) 51, 83, 95, 129, 141, 258
CviKI_1 RGCY 6 cut(s) 51, 83, 95, 129, 141, 258
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 66, 73
DpnII GATC 2 cut(s) 64, 71
EcoRII CCWGG 1 cut(s) 268
Esp3I CGTCTC 2 cut(s) 166, 252
FaiI YATR 1 cut(s) 233
Fnu4HI GCNGC 4 cut(s) 31, 81, 168, 189
Fsp4HI GCNGC 4 cut(s) 31, 81, 168, 189
GluI GCNGC 4 cut(s) 31, 81, 168, 189
GsuI CTGGAG 3 cut(s) 96, 105, 151
HaeIII GGCC 2 cut(s) 51, 141
HapII CCGG 1 cut(s) 138
HgaI GACGC 2 cut(s) 34, 218
Hin1I GRCGYC 1 cut(s) 210
HinfI GANTC 2 cut(s) 151, 174
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 4 cut(s) 42, 71, 115, 208
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 6 cut(s) 50, 59, 103, 149, 188, 212
HpyAV CCTTC 2 cut(s) 15, 252
HpyCH4III ACNGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 185
HpyF3I CTNAG 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 210
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 2 cut(s) 64, 71
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 8 cut(s) 60, 69, 107, 115, 151, 184, 255, 282
MalI GATC 2 cut(s) 66, 73
MbiI CCGCTC 1 cut(s) 80
MboI GATC 2 cut(s) 64, 71
MboII GAAGA 1 cut(s) 3
MflI RGATCY 1 cut(s) 64
MluCI AATT 1 cut(s) 264
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 5 cut(s) 62, 106, 152, 211, 214
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 1 cut(s) 263
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 176, 185
NaeI GCCGGC 1 cut(s) 139
NdeII GATC 2 cut(s) 64, 71
NgoMIV GCCGGC 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 4 cut(s) 32, 82, 169, 190
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PshAI GACNNNNGTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 64
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 4 cut(s) 31, 81, 168, 189
Sau3AI GATC 2 cut(s) 64, 71
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 1 cut(s) 264
SsiI CCGC 4 cut(s) 30, 80, 168, 189
StyD4I CCNGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 3 cut(s) 54, 98, 144
TasI AATT 1 cut(s) 264
TauI GCSGC 4 cut(s) 33, 83, 170, 191
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.