Rorug02G0095200

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000297
Physical Location & Seq
Forward (+)
7796487 .. 7797601
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0095200.1

Sequence Viewer

Length: 618 bp
ATGGCGAAGCGAACCAACCACCTCTGCACCAATCCCAATTCCGATCCGAACCAACCACCCCAAGATGACGATTCCCTCATAACCCAAGTCCTCCGACCCAATGAGAAAGACTGGAACTTTGACCAACTCCACACCCTCCTCTTCCCCAACTCAACCTCTCCTTCTCCTCACTCCCTTTTCCTCATCACTCGCCGCCTCGACGCTCCCTCCAAAGCCCTCAAATTCTTCAATTACGTCTCCGAAAACGTGGCCGGAACCCCTCGAGGATCCAAGGCTTTGCTCTCCTCCGCATTCCAGGCCCTTCTGGAGCTCACATTGCGGGAGCCCACCTCGAAAAAGAAGCTCTTTGAGCTTTACAAGATGGCCAAGGACCGGAATGTCCCGCTGAATCTCAAGGCCGCAGGTCTGATTGTTCTGTCCATGGGCGCGGCTGGGATGGAGGACGAGGCTCTCACAGTGTTTAACGAGCTTCATTTGGGGTTGAAAACTACTCATATTCGCAATGTGGTGATTGGGATGTTACTGAAGATTGGGCGAGTAGATGATGCACTGAAGGTGCTCGACGAAATGCTTCACCCAGGGCCAGAAGCGAAGTTTCGGGTACCGGCGATGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

205

Amino Acids

22.82

Weight (kDa)

8.99

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AbsI CCTCGAGG 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 392
Acc65I GGTACC 1 cut(s) 601
AccB1I GGYRCC 1 cut(s) 601
AccII CGCG 1 cut(s) 428
AciI CCGC 6 cut(s) 193, 288, 319, 383, 399, 428
AclWI GGATC 3 cut(s) 38, 261, 274
AcoI YGGCCR 2 cut(s) 249, 363
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 2 cut(s) 545, 572
AfaI GTAC 1 cut(s) 603
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 2 cut(s) 229, 484
AjnI CCWGG 2 cut(s) 294, 577
AluBI AGCT 4 cut(s) 310, 343, 352, 469
AluI AGCT 4 cut(s) 310, 343, 352, 469
Alw21I GWGCWC 2 cut(s) 312, 561
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 3 cut(s) 38, 261, 274
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 5 cut(s) 249, 297, 363, 396, 581
ApoI RAATTY 1 cut(s) 221
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
Asp700I GAANNNNTTC 1 cut(s) 570
Asp718I GGTACC 1 cut(s) 601
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 3 cut(s) 298, 370, 581
AsuHPI GGTGA 2 cut(s) 520, 566
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 370
BalI TGGCCA 1 cut(s) 365
BamHI GGATCC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 2 cut(s) 312, 327
Bbv12I GWGCWC 2 cut(s) 312, 561
BccI CCATC 2 cut(s) 355, 430
BciT130I CCWGG 2 cut(s) 296, 579
BcoDI GTCTC 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 3 cut(s) 193, 399, 429
BlsI GCNGC 3 cut(s) 194, 400, 430
Bme1390I CCNGG 2 cut(s) 296, 579
Bme18I GGWCC 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 298, 370, 581
BmiI GGNNCC 4 cut(s) 256, 268, 324, 603
BmrFI CCNGG 2 cut(s) 296, 579
BmsI GCATC 1 cut(s) 535
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 377
BsaJI CCNNGG 5 cut(s) 270, 366, 420, 577, 578
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 1 cut(s) 116
Bse3DI GCAATG 2 cut(s) 314, 508
BseBI CCWGG 2 cut(s) 296, 579
BseDI CCNNGG 5 cut(s) 270, 366, 420, 577, 578
BseGI GGATG 2 cut(s) 441, 522
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMI GCAATG 2 cut(s) 314, 508
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 3 cut(s) 128, 156, 274
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 5 cut(s) 251, 299, 365, 398, 583
BshNI GGYRCC 1 cut(s) 601
BsiHKAI GWGCWC 2 cut(s) 312, 561
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 3 cut(s) 252, 373, 605
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 241
BsmBI CGTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 5 cut(s) 251, 299, 365, 398, 583
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 312, 327, 561
Bsp143I GATC 2 cut(s) 43, 266
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 6 cut(s) 193, 288, 319, 383, 399, 428
BspANI GGCC 5 cut(s) 251, 299, 365, 398, 583
BspFNI CGCG 1 cut(s) 428
BspLI GGNNCC 4 cut(s) 256, 268, 324, 603
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 3 cut(s) 38, 261, 274
BspT107I GGYRCC 1 cut(s) 601
BsrDI GCAATG 2 cut(s) 314, 508
BsrFI RCCGGY 1 cut(s) 604
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 5 cut(s) 270, 366, 420, 577, 578
BssMI GATC 2 cut(s) 43, 266
BssT1I CCWWGG 3 cut(s) 270, 366, 420
Bst2UI CCWGG 2 cut(s) 296, 579
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 441, 522
BstFNI CGCG 1 cut(s) 428
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 2 cut(s) 46, 269
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 2 cut(s) 43, 266
BstMWI GCNNNNNNNGC 3 cut(s) 296, 316, 349
BstNI CCWGG 2 cut(s) 296, 579
BstSCI CCNGG 2 cut(s) 294, 577
BstUI CGCG 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 5 cut(s) 251, 299, 365, 398, 583
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 2 cut(s) 441, 522
BtsIMutI CAGTG 2 cut(s) 462, 548
BveI ACCTGC 1 cut(s) 392
CfoI GCGC 1 cut(s) 428
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 3 cut(s) 298, 370, 581
CseI GACGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 602
CviAII CATG 1 cut(s) 421
CviQI GTAC 1 cut(s) 602
DpnI GATC 2 cut(s) 45, 268
DpnII GATC 2 cut(s) 43, 266
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 2 cut(s) 249, 363
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 3 cut(s) 270, 366, 420
Eco24I GRGCYC 2 cut(s) 312, 327
Eco47I GGWCC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 2 cut(s) 545, 572
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 294, 577
EcoT14I CCWWGG 3 cut(s) 270, 366, 420
EcoT38I GRGCYC 2 cut(s) 312, 327
ErhI CCWWGG 3 cut(s) 270, 366, 420
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 1 cut(s) 424
FaiI YATR 3 cut(s) 80, 422, 495
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 420
FauI CCCGC 2 cut(s) 312, 390
Fnu4HI GCNGC 3 cut(s) 193, 399, 429
FokI GGATG 2 cut(s) 448, 529
FriOI GRGCYC 2 cut(s) 312, 327
Fsp4HI GCNGC 3 cut(s) 193, 399, 429
GlaI GCGC 1 cut(s) 427
GluI GCNGC 3 cut(s) 193, 399, 429
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 5 cut(s) 251, 299, 365, 398, 583
HapII CCGG 3 cut(s) 252, 373, 605
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 428
Hin1II CATG 1 cut(s) 424
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HinfI GANTC 2 cut(s) 71, 388
HpaII CCGG 3 cut(s) 252, 373, 605
HphI GGTGA 2 cut(s) 520, 566
Hpy188I TCNGA 5 cut(s) 43, 48, 95, 241, 408
Hpy188III TCNNGA 1 cut(s) 305
Hpy99I CGWCG 2 cut(s) 203, 566
HpyAV CCTTC 3 cut(s) 171, 311, 547
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 2 cut(s) 234, 246
HpyCH4V TGCA 2 cut(s) 27, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 316, 349
HpySE526I ACGT 2 cut(s) 234, 246
Hsp92II CATG 1 cut(s) 424
HspAI GCGC 1 cut(s) 426
KpnI GGTACC 1 cut(s) 605
Kzo9I GATC 2 cut(s) 43, 266
LmnI GCTCC 3 cut(s) 208, 307, 322
LweI GCATC 1 cut(s) 535
MaeII ACGT 2 cut(s) 234, 246
MaeIII GTNAC 1 cut(s) 519
MalI GATC 2 cut(s) 45, 268
MboI GATC 2 cut(s) 43, 266
MboII GAAGA 3 cut(s) 133, 217, 538
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 3 cut(s) 312, 327, 561
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 3 cut(s) 37, 221, 229
MluNI TGGCCA 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 118
Mox20I TGGCCA 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 570
MscI TGGCCA 1 cut(s) 365
MseI TTAA 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 3 cut(s) 252, 373, 605
MspR9I CCNGG 2 cut(s) 296, 579
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 2 cut(s) 296, 579
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 3 cut(s) 296, 316, 349
NcoI CCATGG 1 cut(s) 420
NdeII GATC 2 cut(s) 43, 266
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 4 cut(s) 256, 268, 324, 603
PaeR7I CTCGAG 1 cut(s) 261
PasI CCCWGGG 1 cut(s) 578
PctI GAATGC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 71, 388
PkrI GCNGC 3 cut(s) 194, 400, 430
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 294, 577
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 2 cut(s) 294, 577
PspN4I GGNNCC 4 cut(s) 256, 268, 324, 603
PspPI GGNCC 3 cut(s) 298, 370, 581
PspXI VCTCGAGB 1 cut(s) 261
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
SacI GAGCTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 3 cut(s) 193, 399, 429
Sau3AI GATC 2 cut(s) 43, 266
Sau96I GGNCC 3 cut(s) 298, 370, 581
ScrFI CCNGG 2 cut(s) 296, 579
SduI GDGCHC 3 cut(s) 312, 327, 561
SfaNI GCATC 1 cut(s) 535
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 370
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 261, 392
SmoI CTYRAG 2 cut(s) 261, 392
Sse9I AATT 3 cut(s) 37, 221, 229
SsiI CCGC 6 cut(s) 193, 288, 319, 383, 399, 428
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 294, 577
StyI CCWWGG 3 cut(s) 270, 366, 420
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 2 cut(s) 237, 249
TaqI TCGA 4 cut(s) 198, 262, 332, 561
TasI AATT 3 cut(s) 37, 221, 229
TauI GCSGC 3 cut(s) 195, 401, 431
TfiI GAWTC 2 cut(s) 71, 388
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 2 cut(s) 462, 555
TspDTI ATGAA 1 cut(s) 461
TspRI CASTG 2 cut(s) 462, 555
VpaK11BI GGWCC 1 cut(s) 370
XapI RAATTY 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.