Rh2DG502800

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000297
Physical Location & Seq
Reverse (-)
72343517 .. 72345634
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG502800.1

Sequence Viewer

Length: 234 bp
ATGTGCAACTATAATGTTTCCAACACAAAGAGCAACTTGCTGAAGAAAGCAAAATTAGACTATCTTAAAAGTCCTGAGGTGAGAAATGCTGCTGTTATGAAGAGAACTGCGTTCCAGAGGAGTGCCCCTCCCATGAAGAAGTTAAATGGGTTTTCTGGGAACCAACTGGGTTCCTCTTCTAATCAGAGCAAGCCCATTGAGAGGACATTCAAGCCAAAGAAGATGCCGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

77

Amino Acids

8.68

Weight (kDa)

10.54

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 211
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 161, 172
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 171
Bse21I CCTNAGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 161, 172
BsrI ACTGG 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 95, 181
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 191
CviAII CATG 1 cut(s) 133
CviJI RGCY 2 cut(s) 193, 214
CviKI_1 RGCY 2 cut(s) 193, 214
DdeI CTNAG 1 cut(s) 75
Eam1104I CTCTTC 2 cut(s) 95, 181
EarI CTCTTC 2 cut(s) 95, 181
Eco57I CTGAAG 1 cut(s) 62
Eco81I CCTNAGG 1 cut(s) 75
FaeI CATG 1 cut(s) 136
FaiI YATR 3 cut(s) 12, 98, 134
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
Hin1II CATG 1 cut(s) 136
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 74, 115
HpyCH4V TGCA 1 cut(s) 6
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 1 cut(s) 136
LpnPI CCDG 4 cut(s) 87, 128, 141, 152
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 213
MboII GAAGA 5 cut(s) 55, 112, 148, 168, 232
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 70, 111, 138, 184, 195
MseI TTAA 2 cut(s) 66, 143
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 161, 172
PkrI GCNGC 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 161, 172
SaqAI TTAA 2 cut(s) 66, 143
SatI GCNGC 1 cut(s) 90
SduI GDGCHC 1 cut(s) 127
SetI ASST 1 cut(s) 81
SfaNI GCATC 1 cut(s) 213
SgeI CNNG 8 cut(s) 49, 86, 127, 145, 168, 179, 202, 223
Sse9I AATT 1 cut(s) 53
TasI AATT 1 cut(s) 53
Tru1I TTAA 2 cut(s) 66, 143
Tru9I TTAA 2 cut(s) 66, 143
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 113, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.